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    usp107 U1 snRNP-associated protein Usp107 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541211, updated on 18-Sep-2024

    Summary

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    Official Symbol
    usp107
    Official Full Name
    U1 snRNP-associated protein Usp107
    Primary source
    PomBase:SPBC839.10
    Locus tag
    SPOM_SPBC839.10
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    snu71
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    Genomic context

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    See usp107 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003423.3 (618347..620884)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pig-N family GPI synthesis protein Neighboring gene ncRNA Neighboring gene mitochondrial 37S ribosomal protein bS21m Neighboring gene ER uridine diphosphate-glucose transmembrane transporter Hut1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase III complex subunit Rpc31

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A U1-U2 snRNP interaction network during intron definition. Shao W, et al. Mol Cell Biol, 2012 Jan. PMID 22064476, Free PMC Article
    2. Proteomic analysis of the U1 snRNP of Schizosaccharomyces pombe reveals three essential organism-specific proteins. Newo AN, et al. Nucleic Acids Res, 2007. PMID 17264129, Free PMC Article
    3. The fission yeast ES2 homologue, Bis1, interacts with the Ish1 stress-responsive nuclear envelope protein. Taricani L, et al. J Biol Chem, 2002 Mar 22. PMID 11751918
    4. Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site. Roberts-Galbraith RH, et al. Mol Cell, 2010 Jul 9. PMID 20603077, Free PMC Article
    5. Sde2 is an intron-specific pre-mRNA splicing regulator activated by ubiquitin-like processing. Thakran P, et al. EMBO J, 2018 Jan 4. PMID 28947618, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 5'-splice site recognition IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of U2-type prespliceosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    U1 snRNP-associated protein Usp107

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      618347..620884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021156.3 → NP_595250.1  U1 snRNP-associated protein Usp107 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595250.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q8WZK0, Q9UTX7
      Conserved Domains (2) summary
      smart00311
      Location:618 → 691
      PWI; PWI, domain in splicing factors
      cd12446
      Location:139 → 218
      RRM_RBM25; RNA recognition motif in eukaryotic RNA-binding protein 25 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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