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    uga1 4-aminobutyrate aminotransferase (GABA transaminase) [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542494, updated on 18-Sep-2024

    Summary

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    Official Symbol
    uga1
    Official Full Name
    4-aminobutyrate aminotransferase (GABA transaminase)
    Primary source
    PomBase:SPAC19D5.07
    Locus tag
    SPOM_SPAC19D5.07
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See uga1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (5222890..5224795)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene DNA replication factor C complex subunit Ctf8 Neighboring gene RNA NAD-cap (NAD-forming) hydrolase/RNA pyrophosphohydrolase Din1 Neighboring gene mitophagy receptor Atg43 Neighboring gene ncRNA Neighboring gene Smc5-6 complex SMC P-loop ATPase subunit Smc5 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A gene duplication led to specialized gamma-aminobutyrate and beta-alanine aminotransferase in yeast. Andersen G, et al. FEBS J, 2007 Apr. PMID 17355287
    2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables 4-aminobutyrate:2-oxoglutarate transaminase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables pyridoxal phosphate binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gamma-aminobutyric acid catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in gamma-aminobutyric acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in glutamate catabolic process EXP
    Inferred from Experiment
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    4-aminobutyrate aminotransferase (GABA transaminase)

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      5222890..5224795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020336.3 → NP_594905.1  4-aminobutyrate aminotransferase (GABA transaminase) [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594905.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13837
      Conserved Domains (2) summary
      TIGR00699
      Location:11 → 474
      GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
      COG0160
      Location:12 → 474
      GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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