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    rfp1 SUMO-targeted ubiquitin-protein ligase subunit Rfp1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542542, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rfp1
    Official Full Name
    SUMO-targeted ubiquitin-protein ligase subunit Rfp1
    Primary source
    PomBase:SPAC19A8.10
    Locus tag
    SPOM_SPAC19A8.10
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    mug140
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    Genomic context

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    See rfp1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (2465369..2467309, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene U1 snRNP-associated protein Usp101 Neighboring gene mRNA-decapping complex catalytic subunit Dcp2 Neighboring gene ncRNA Neighboring gene recombination protein Irc6 Neighboring gene transport protein Yos1 Neighboring gene nonsense-mediated decay protein Upf2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conserved function of RNF4 family proteins in eukaryotes: targeting a ubiquitin ligase to SUMOylated proteins. Sun H, et al. EMBO J, 2007 Sep 19. PMID 17762864, Free PMC Article
    2. Expression of hsp16 in response to nucleotide depletion is regulated via the spc1 MAPK pathway in Schizosaccharomyces pombe. Taricani L, et al. Nucleic Acids Res, 2001 Jul 15. PMID 11452028, Free PMC Article
    3. Fission yeast Rnf4 homologs are required for DNA repair. Kosoy A, et al. J Biol Chem, 2007 Jul 13. PMID 17502373
    4. Concerted action of the ubiquitin-fusion degradation protein 1 (Ufd1) and Sumo-targeted ubiquitin ligases (STUbLs) in the DNA-damage response. Køhler JB, et al. PLoS One, 2013. PMID 24265825, Free PMC Article
    5. The nuclear pore primes recombination-dependent DNA synthesis at arrested forks by promoting SUMO removal. Kramarz K, et al. Nat Commun, 2020 Nov 6. PMID 33159083, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding ISM
    Inferred from Sequence Model
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA repair IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in stalled replication fork localization to nuclear periphery IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SUMO-targeted ubiquitin ligase complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    is_active_in chromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in site of double-strand break IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SUMO-targeted ubiquitin-protein ligase subunit Rfp1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      2465369..2467309 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019211.3 → NP_593782.1  SUMO-targeted ubiquitin-protein ligase subunit Rfp1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593782.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13826
      Conserved Domains (1) summary
      pfam14634
      Location:189 → 241
      zf-RING_5; zinc-RING finger domain
    Nucleotide Protein
    Heading Accession and Version

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