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    rpl13 60S ribosomal protein eL13 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2543553, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rpl13
    Official Full Name
    60S ribosomal protein eL13
    Primary source
    PomBase:SPAC664.05
    Locus tag
    SPOM_SPAC664.05
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See rpl13 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (1711185..1712043)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RNA polymerase II-associated Paf1 complex protein Neighboring gene 40S ribosomal protein uS9 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosome biogenesis protein rlp7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of stress granule assembly in Schizosaccharomyces pombe. Wang CY, et al. RNA, 2012 Apr. PMID 22328580, Free PMC Article
    2. Cotranscriptional recruitment of the nuclear poly(A)-binding protein Pab2 to nascent transcripts and association with translating mRNPs. Lemieux C, et al. Nucleic Acids Res, 2009 Jun. PMID 19336419, Free PMC Article
    3. Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast. Hirano Y, et al. J Biochem, 2023 Jun 30. PMID 36799444
    4. Endogenous U2·U5·U6 snRNA complexes in S. pombe are intron lariat spliceosomes. Chen W, et al. RNA, 2014 Mar. PMID 24442611, Free PMC Article
    5. Chromatin localization of nucleophosmin organizes ribosome biogenesis. Ugolini I, et al. Mol Cell, 2022 Dec 1. PMID 36423630, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of preribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein eL13

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      1711185..1712043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018886.3 → NP_593453.1  60S ribosomal protein eL13 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593453.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74175
      Conserved Domains (1) summary
      pfam01294
      Location:10 → 179
      Ribosomal_L13e; Ribosomal protein L13e
    Nucleotide Protein
    Heading Accession and Version

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