U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Casd1 CAS1 domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 213819, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Casd1provided by MGI
    Official Full Name
    CAS1 domain containing 1provided by MGI
    Primary source
    MGI:MGI:2384865
    See related
    Ensembl:ENSMUSG00000015189 AllianceGenome:MGI:2384865
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cas1; SOAT; Cas1p; Cast1
    Summary
    Predicted to enable N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be active in Golgi membrane. Is expressed in several structures, including liver; lung; placenta; spleen; and yolk sac. Orthologous to human CASD1 (CAS1 domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 14.8), CNS E18 (RPKM 14.7) and 28 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Casd1 in Genome Data Viewer
    Location:
    6 A1; 6 1.81 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (4600911..4643355)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (4600911..4643355)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene chitobiase, di-N-acetyl- pseudogene Neighboring gene predicted gene, 33959 Neighboring gene predicted gene, 38761 Neighboring gene STARR-seq mESC enhancer starr_15017 Neighboring gene STARR-seq mESC enhancer starr_15018 Neighboring gene sarcoglycan, epsilon Neighboring gene STARR-seq mESC enhancer starr_15019

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Alterations in sialic-acid O-acetylation glycoforms during murine erythrocyte development. Mahajan VS, et al. Glycobiology, 2019 Mar 1. PMID 30597004, Free PMC Article
    2. A protein interaction node at the neurotransmitter release site: domains of Aczonin/Piccolo, Bassoon, CAST, and rim converge on the N-terminal domain of Munc13-1. Wang X, et al. J Neurosci, 2009 Oct 7. PMID 19812333, Free PMC Article
    3. Identification of a large novel imprinted gene cluster on mouse proximal chromosome 6. Ono R, et al. Genome Res, 2003 Jul. PMID 12840045, Free PMC Article
    4. Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality. Ono R, et al. Nat Genet, 2006 Jan. PMID 16341224
    5. Proteomic and yeast 2-hybrid screens to identify PTEN binding partners. Tibarewal P, et al. Adv Biol Regul, 2024 Jan. PMID 37839992

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (2) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC6840

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in carbohydrate metabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in Golgi membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    N-acetylneuraminate (7)9-O-acetyltransferase
    Names
    CAS1 domain-containing protein 1
    N-acetylneuraminate 9-O-acetyltransferase
    O-acetyltransferase
    sialate O-acetyltransferase
    NP_001366072.1
    NP_001366073.1
    NP_001366074.1
    NP_663373.2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001379143.1 → NP_001366072.1  N-acetylneuraminate (7)9-O-acetyltransferase isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC091395
      Conserved Domains (1) summary
      pfam07779
      Location:299 → 741
      Cas1_AcylT; 10 TM Acyl Transferase domain found in Cas1p

    2. NM_001379144.1 → NP_001366073.1  N-acetylneuraminate (7)9-O-acetyltransferase isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC091395
      Conserved Domains (1) summary
      pfam07779
      Location:171 → 647
      Cas1_AcylT; 10 TM Acyl Transferase domain found in Cas1p

    3. NM_001379145.1 → NP_001366074.1  N-acetylneuraminate (7)9-O-acetyltransferase isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC091395
      Conserved Domains (1) summary
      pfam07779
      Location:16 → 492
      Cas1_AcylT; 10 TM Acyl Transferase domain found in Cas1p

    4. NM_145398.4 → NP_663373.2  N-acetylneuraminate (7)9-O-acetyltransferase isoform 1

      See identical proteins and their annotated locations for NP_663373.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AC091395
      Consensus CDS
      CCDS19896.1
      UniProtKB/Swiss-Prot
      Q1RN01, Q6PD39, Q7TN73, Q8VEF5
      Related
      ENSMUSP00000015333.6, ENSMUST00000015333.12
      Conserved Domains (2) summary
      pfam07779
      Location:299 → 775
      Cas1_AcylT; 10 TM Acyl Transferase domain found in Cas1p
      pfam13839
      Location:73 → 292
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

    RNA

    1. NR_166521.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091395

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      4600911..4643355
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7TN73.1 GenPept UniProtKB/Swiss-Prot:Q7TN73

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools