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    TTTY2 testis expressed transcript, Y-linked 2 [ Homo sapiens (human) ]

    Gene ID: 60439, updated on 22-Oct-2024

    Summary

    Official Symbol
    TTTY2provided by HGNC
    Official Full Name
    testis expressed transcript, Y-linked 2provided by HGNC
    Primary source
    HGNC:HGNC:14023
    See related
    Ensembl:ENSG00000212855 AllianceGenome:HGNC:14023
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TTY2; lINC00109; NCRNA00109
    Expression
    Biased expression in gall bladder (RPKM 3.9), testis (RPKM 1.4) and 1 other tissue See more
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    Genomic context

    See TTTY2 in Genome Data Viewer
    Location:
    Yp11.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (9736286..9758476)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (10044989..10067190)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (9573895..9596085)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene testis expressed transcript, Y-linked 7B Neighboring gene testis expressed transcript, Y-linked 21 Neighboring gene testis expressed transcript, Y-linked 1 Neighboring gene uncharacterized LOC107987342 Neighboring gene testis expressed transcript, Y-linked 22

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • long intergenic non-protein coding RNA 109
    • testis-specific testis transcript Y 2
    • testis-specific transcript, Y-linked 2 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001536.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC017019, AF000991, DB449030
      Related
      ENST00000757466.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      9736286..9758476
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      10044989..10067190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)