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    D830030K20Rik RIKEN cDNA D830030K20 gene [ Mus musculus (house mouse) ]

    Gene ID: 320333, updated on 27-Nov-2024

    Summary

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    Official Symbol
    D830030K20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D830030K20 geneprovided by MGI
    Primary source
    MGI:MGI:2443830
    See related
    Ensembl:ENSMUSG00000096039 AllianceGenome:MGI:2443830
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 1.9), CNS E18 (RPKM 1.8) and 10 other tissues See more
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    Genomic context

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    See D830030K20Rik in Genome Data Viewer
    Location:
    14 A2; 14 1.71 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (19232734..19261394, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (3208493..3234562)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700110I01 gene Neighboring gene predicted gene, 46491 Neighboring gene ribosomal protein L3 pseudogene Neighboring gene ubiquitin specific peptidase 7 pseudogene Neighboring gene predicted gene, 57810 Neighboring gene predicted gene 17222 Neighboring gene predicted gene 5795 Neighboring gene predicted gene 10340

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
    2. The treasury of the commons: making use of public gene expression resources to better characterize the molecular diversity of inhibitory interneurons in the cerebellar cortex. Schilling K, et al. Cerebellum, 2009 Dec. PMID 19554387
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    alpha28-takusan
    Names
    alpha30-takusan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320366.1 → NP_001307295.1  alpha28-takusan

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK082998, AK085928, BE448911, CD775025
      Consensus CDS
      CCDS36793.1
      UniProtKB/TrEMBL
      Q8BGG1
      Related
      ENSMUSP00000153088.2, ENSMUST00000225885.2
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 56
      Takusan

    2. NM_177135.5 → NP_796109.1  alpha28-takusan

      See identical proteins and their annotated locations for NP_796109.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK085928, CD775025
      Consensus CDS
      CCDS36793.1
      UniProtKB/TrEMBL
      Q8BGG1
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 56
      Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      19232734..19261394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158671.1 → XP_036014564.1  alpha28-takusan isoform X1

      UniProtKB/TrEMBL
      Q8BGG1
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 56
      Takusan

    2. XM_036158674.1 → XP_036014567.1  alpha28-takusan isoform X1

      UniProtKB/TrEMBL
      Q8BGG1
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 56
      Takusan

    3. XM_036158672.1 → XP_036014565.1  alpha28-takusan isoform X1

      UniProtKB/TrEMBL
      Q8BGG1
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 56
      Takusan

    4. XM_036158673.1 → XP_036014566.1  alpha28-takusan isoform X1

      UniProtKB/TrEMBL
      Q8BGG1
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 56
      Takusan

    5. XM_017316345.1 → XP_017171834.1  alpha28-takusan isoform X4

    6. XM_036158675.1 → XP_036014568.1  alpha28-takusan isoform X3

    7. XM_011244802.2 → XP_011243104.1  alpha28-takusan isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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