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    Rtl8b retrotransposon Gag like 8B [ Mus musculus (house mouse) ]

    Gene ID: 553127, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rtl8bprovided by MGI
    Official Full Name
    retrotransposon Gag like 8Bprovided by MGI
    Primary source
    MGI:MGI:3576504
    See related
    Ensembl:ENSMUSG00000067924 AllianceGenome:MGI:3576504
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cxx1b; Mart8c
    Summary
    Is expressed in metanephros; nervous system; and neural retina. Orthologous to several human genes including RTL8A (retrotransposon Gag like 8A) and RTL8B (retrotransposon Gag like 8B). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See Rtl8b in Genome Data Viewer
    Location:
    X A5; X 29.91 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52671132..52672404, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53669165..53670437, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene centromere protein K pseudogene Neighboring gene retrotransposon Gag like 8A Neighboring gene 53064 Neighboring gene expressed sequence AW822252

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    retrotransposon Gag like 8B
    Names
    CAAX box 1 homolog B
    CAAX box 1B
    mammalian retrotransposon derived 8c

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001018063.2NP_001018073.1  retrotransposon Gag like 8B

      See identical proteins and their annotated locations for NP_001018073.1

      Status: VALIDATED

      Source sequence(s)
      AI182586, AK003646, BY248612
      Consensus CDS
      CCDS30135.1
      UniProtKB/TrEMBL
      Q9D1F0
      Related
      ENSMUSP00000086157.4, ENSMUST00000088778.5
      Conserved Domains (1) summary
      pfam16297
      Location:26113
      DUF4939; Domain of unknown function (DUF4939)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      52671132..52672404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)