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    H2al3 H2A histone family member L3 [ Mus musculus (house mouse) ]

    Gene ID: 385317, updated on 27-Nov-2024

    Summary

    Official Symbol
    H2al3provided by MGI
    Official Full Name
    H2A histone family member L3provided by MGI
    Primary source
    MGI:MGI:1922521
    See related
    Ensembl:ENSMUSG00000048994 AllianceGenome:MGI:1922521
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930557A04Rik
    Summary
    Predicted to be a structural constituent of chromatin. Predicted to be involved in heterochromatin formation. Predicted to be part of nucleosome. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

    See H2al3 in Genome Data Viewer
    Location:
    X A1.1; X 4.62 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (9715942..9716491)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (9849703..9850252)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_46713 Neighboring gene dynein light chain Tctex-type 3 Neighboring gene synaptotagmin-like 5 Neighboring gene STARR-seq mESC enhancer starr_46715 Neighboring gene H2A.P histone Neighboring gene STARR-seq mESC enhancer starr_46716 Neighboring gene predicted gene 5754 Neighboring gene STARR-seq mESC enhancer starr_46717 Neighboring gene sushi-repeat-containing protein

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables structural constituent of chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in heterochromatin formation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of nucleosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC385317

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029229.1NP_083505.1  uncharacterized protein LOC385317

      See identical proteins and their annotated locations for NP_083505.1

      Status: VALIDATED

      Source sequence(s)
      AK016155
      Consensus CDS
      CCDS52999.1
      UniProtKB/TrEMBL
      Q9D4U4
      Related
      ENSMUSP00000052025.2, ENSMUST00000057113.3
      Conserved Domains (1) summary
      cl23907
      Location:496
      H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      9715942..9716491
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)