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    LOC400627 uncharacterized LOC400627 [ Homo sapiens (human) ]

    Gene ID: 400627, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC400627
    Gene description
    uncharacterized LOC400627
    See related
    Ensembl:ENSG00000261924
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward spleen (RPKM 4.4) See more
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    Genomic context

    See LOC400627 in Genome Data Viewer
    Location:
    17q25.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (80966239..80971213, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (81873174..81878154, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (78940039..78945013, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene regulatory associated protein of MTOR complex 1 Neighboring gene uncharacterized LOC124904076 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78801060-78801750 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78801751-78802440 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78805646-78806418 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:78807023-78807239 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78807964-78808735 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78829045-78829576 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:78829770-78830969 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78831337-78832266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78847077-78848036 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78852392-78852991 Neighboring gene uncharacterized LOC124904075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78933187-78933704 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:78937983-78938532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78939083-78939632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78943614-78944419 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78944420-78945224 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:78955555-78956054 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12952 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9112 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9113 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9114 Neighboring gene ribosomal protein L12 pseudogene 37 Neighboring gene charged multivesicular body protein 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_148968.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC127496
      Related
      ENST00000576234.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      80966239..80971213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      81873174..81878154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)