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    LINC00563 long intergenic non-protein coding RNA 563 [ Homo sapiens (human) ]

    Gene ID: 100861554, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00563provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 563provided by HGNC
    Primary source
    HGNC:HGNC:43707
    See related
    Ensembl:ENSG00000261097 AllianceGenome:HGNC:43707
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LINC00563 in Genome Data Viewer
    Location:
    13q14.13
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (46296445..46297844, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (45517451..45518850, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (46870580..46871979, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 63 Neighboring gene uncharacterized LOC105370194 Neighboring gene ABITRAM pseudogene 1 Neighboring gene uncharacterized LOC124903170 Neighboring gene NANOG hESC enhancer GRCh37_chr13:46867593-46868094 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:46870567-46871766 Neighboring gene NANOG hESC enhancer GRCh37_chr13:46893525-46894073 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:46895131-46895630 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7694 Neighboring gene rubicon like autophagy enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7695 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7697 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7698 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7699 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7700 Neighboring gene RNA, U2 small nuclear 6, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7701 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7703 Neighboring gene RNA, U6 small nuclear 68, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale concatenation cDNA sequencing. Yu W, et al. Genome Res, 1997 Apr. PMID 9110174, Free PMC Article
    2. A "double adaptor" method for improved shotgun library construction. Andersson B, et al. Anal Biochem, 1996 Apr 5. PMID 8619474

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047493.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      U79295
      Related
      ENST00000566370.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      46296445..46297844 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      45517451..45518850 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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