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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001081216.1 → NP_001074685.1 PH-interacting protein
Status: VALIDATED
- Source sequence(s)
-
AC121787, AC151966
- Consensus CDS
-
CCDS40706.1
- UniProtKB/Swiss-Prot
- Q3TS96, Q80VI6, Q8VDD9, Q9EPY1, Q9ESL6
- UniProtKB/TrEMBL
-
F8VQ93
- Related
- ENSMUSP00000034787.6, ENSMUST00000034787.12
- Conserved Domains (5) summary
-
- cd05496
Location:1316 → 1434
- Bromo_WDR9_II; Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- cd05529
Location:1148 → 1263
- Bromo_WDR9_I_like; Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- COG2319
Location:178 → 541
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:175 → 495
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:186 → 223
- 7WD40; WD40 repeat [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000075.7 Reference GRCm39 C57BL/6J
- Range
-
82748212..82857776 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006511564.5 → XP_006511627.1 PH-interacting protein isoform X1
- UniProtKB/Swiss-Prot
- Q3TS96, Q80VI6, Q8VDD9, Q9EPY1, Q9ESL6
- Conserved Domains (4) summary
-
- cd05496
Location:1315 → 1433
- Bromo_WDR9_II; Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- cd05529
Location:1147 → 1262
- Bromo_WDR9_I_like; Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- cd00200
Location:175 → 495
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:186 → 223
- 7WD40; WD40 repeat [structural motif]
-
XM_030244736.1 → XP_030100596.1 PH-interacting protein isoform X3
- UniProtKB/Swiss-Prot
- Q3TS96, Q80VI6, Q8VDD9, Q9EPY1, Q9ESL6
- Conserved Domains (4) summary
-
- cd05496
Location:1145 → 1263
- Bromo_WDR9_II; Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- cd05529
Location:977 → 1092
- Bromo_WDR9_I_like; Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- cd00200
Location:27 → 325
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:59 → 95
- 7WD40; WD40 repeat [structural motif]
-
XM_006511565.5 → XP_006511628.1 PH-interacting protein isoform X2
- UniProtKB/Swiss-Prot
- Q3TS96, Q80VI6, Q8VDD9, Q9EPY1, Q9ESL6
- Conserved Domains (4) summary
-
- cd05496
Location:1146 → 1264
- Bromo_WDR9_II; Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- cd05529
Location:978 → 1093
- Bromo_WDR9_I_like; Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- cd00200
Location:27 → 325
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:59 → 95
- 7WD40; WD40 repeat [structural motif]
-
XM_030244740.2 → XP_030100600.1 PH-interacting protein isoform X5
- Conserved Domains (2) summary
-
- cd05496
Location:760 → 878
- Bromo_WDR9_II; Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- cd05529
Location:592 → 707
- Bromo_WDR9_I_like; Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
-
XM_030244738.2 → XP_030100598.1 PH-interacting protein isoform X4
- Conserved Domains (2) summary
-
- cd05496
Location:761 → 879
- Bromo_WDR9_II; Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
- cd05529
Location:593 → 708
- Bromo_WDR9_I_like; Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional ...
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_031879.1: Suppressed sequence
- Description
- NM_031879.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.