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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_016144.2 RefSeqGene
- Range
-
5002..359160
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001099952.4 → NP_001093422.2 inositol 1,4,5-trisphosphate-gated calcium channel ITPR1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform 1.
- Source sequence(s)
-
AC018816, AC024168, AC069248, AC090944
- Consensus CDS
-
CCDS46740.2
- UniProtKB/TrEMBL
-
A0A3B3IU04
- Related
- ENSP00000349597.4, ENST00000357086.10
- Conserved Domains (6) summary
-
- smart00472
Location:231 → 287
- MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
- pfam00520
Location:2302 → 2561
- Ion_trans; Ion transport protein
- pfam01365
Location:476 → 665
- RYDR_ITPR; RIH domain
- pfam02815
Location:232 → 433
- MIR; MIR domain
- pfam08454
Location:1925 → 2030
- RIH_assoc; RyR and IP3R Homology associated
- pfam08709
Location:4 → 225
- Ins145_P3_rec; Inositol 1,4,5-trisphosphate/ryanodine receptor
-
NM_001168272.2 → NP_001161744.1 inositol 1,4,5-trisphosphate-gated calcium channel ITPR1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon, uses an alternate in-frame splice site and includes three additional exons in the central coding region, compared to variant 1, resulting in an isoform (3) that is longer than isoform 1.
- Source sequence(s)
-
AC018816, AC024168, AC069248, AC090944, U23850
- Consensus CDS
-
CCDS54551.1
- UniProtKB/TrEMBL
-
A0A3B3ITU8
- Related
- ENSP00000401671.2, ENST00000443694.5
- Conserved Domains (6) summary
-
- smart00472
Location:231 → 287
- MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
- pfam00520
Location:2335 → 2594
- Ion_trans; Ion transport protein
- pfam01365
Location:461 → 650
- RYDR_ITPR; RIH domain
- pfam02815
Location:232 → 418
- MIR; MIR domain
- pfam08454
Location:1958 → 2063
- RIH_assoc; RyR and IP3R Homology associated
- pfam08709
Location:4 → 225
- Ins145_P3_rec; Inositol 1,4,5-trisphosphate/ryanodine receptor
-
NM_001378452.1 → NP_001365381.1 inositol 1,4,5-trisphosphate-gated calcium channel ITPR1 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC018816, AC024168, AC069248, AC090944
- Consensus CDS
-
CCDS93191.1
- UniProtKB/Swiss-Prot
- E7EPX7, E9PDE9, Q14643, Q14660, Q99897
- UniProtKB/TrEMBL
-
A0A3B3IU04
- Related
- ENSP00000497605.1, ENST00000649015.2
- Conserved Domains (5) summary
-
- pfam00520
Location:2359 → 2609
- Ion_trans; Ion transport protein
- pfam01365
Location:474 → 670
- RYDR_ITPR; RIH domain
- pfam02815
Location:232 → 433
- MIR; MIR domain
- pfam08454
Location:1971 → 2078
- RIH_assoc; RyR and IP3R Homology associated
- pfam08709
Location:4 → 229
- Ins145_P3_rec; Inositol 1,4,5-trisphosphate/ryanodine receptor
-
NM_002222.7 → NP_002213.5 inositol 1,4,5-trisphosphate-gated calcium channel ITPR1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in a shorter isoform (2), compared to isoform 1.
- Source sequence(s)
-
AC018816, AC024168, AC069248, AC090944
- Consensus CDS
-
CCDS54550.1
- UniProtKB/TrEMBL
-
A0A3B3ITU8
- Related
- ENSP00000397885.2, ENST00000456211.8
- Conserved Domains (6) summary
-
- smart00472
Location:231 → 287
- MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
- pfam00520
Location:2287 → 2546
- Ion_trans; Ion transport protein
- pfam01365
Location:461 → 650
- RYDR_ITPR; RIH domain
- pfam02815
Location:232 → 418
- MIR; MIR domain
- pfam08454
Location:1910 → 2015
- RIH_assoc; RyR and IP3R Homology associated
- pfam08709
Location:4 → 225
- Ins145_P3_rec; Inositol 1,4,5-trisphosphate/ryanodine receptor
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
4493348..4847506
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
4487354..4841309
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)