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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_033243.2 RefSeqGene
- Range
-
4889..35692
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_995
mRNA and Protein(s)
-
NM_001303433.2 → NP_001290362.1 far upstream element-binding protein 1 isoform 1
See identical proteins and their annotated locations for NP_001290362.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC096948, AK300032, CB133133, DA113820, U05040
- UniProtKB/TrEMBL
- A0A1Z1G4M2, B4DT31, E9PCF5
- Conserved Domains (5) summary
-
- pfam09005
Location:623 → 643
- DUF1897; Domain of unknown function (DUF1897)
- cd22478
Location:119 → 193
- KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22481
Location:207 → 276
- KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22484
Location:297 → 364
- KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22487
Location:397 → 468
- KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
-
NM_001376055.1 → NP_001362984.1 far upstream element-binding protein 1 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC096948, KF510733
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
- Conserved Domains (5) summary
-
- pfam09005
Location:622 → 642
- DUF1897; Domain of unknown function (DUF1897)
- cd22478
Location:118 → 192
- KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22481
Location:206 → 275
- KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22484
Location:296 → 363
- KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22487
Location:396 → 467
- KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
-
NM_001376056.1 → NP_001362985.1 far upstream element-binding protein 1 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC096948, KF510733
- Consensus CDS
-
CCDS90982.1
- UniProtKB/TrEMBL
- A0A1Z1G4M2, A0A994J3Q8
- Related
- ENSP00000515388.1, ENST00000703586.1
- Conserved Domains (5) summary
-
- pfam09005
Location:601 → 621
- DUF1897; Domain of unknown function (DUF1897)
- cd22478
Location:97 → 171
- KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22481
Location:185 → 254
- KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22484
Location:275 → 342
- KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22487
Location:375 → 446
- KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
-
NM_001376057.1 → NP_001362986.1 far upstream element-binding protein 1 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC096948, KF510733
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
- Conserved Domains (5) summary
-
- pfam09005
Location:601 → 621
- DUF1897; Domain of unknown function (DUF1897)
- cd22478
Location:97 → 171
- KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22481
Location:185 → 254
- KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22484
Location:275 → 342
- KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22487
Location:375 → 446
- KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
-
NM_001410804.1 → NP_001397733.1 far upstream element-binding protein 1 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC096948, KF510733
- Consensus CDS
-
CCDS90984.1
- UniProtKB/TrEMBL
- A0A1Z1G4M2, C9JSZ1
- Related
- ENSP00000402630.2, ENST00000421641.2
-
NM_003902.5 → NP_003893.2 far upstream element-binding protein 1 isoform 2
See identical proteins and their annotated locations for NP_003893.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AC096948, CB133133, DA113820, U05040
- Consensus CDS
-
CCDS683.1
- UniProtKB/Swiss-Prot
- Q12828, Q96AE4
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
- Related
- ENSP00000359804.2, ENST00000370768.7
- Conserved Domains (2) summary
-
- pfam09005
Location:602 → 622
- DUF1897; Domain of unknown function (DUF1897)
- cl00098
Location:98 → 172
- KH-I; K homology (KH) RNA-binding domain, type I
RNA
-
NR_130152.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate internal exon, uses an alternate splice site in an internal exon, and differs in the 3' terminal region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
BC017247, DA113820
-
NR_146539.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an alternate internal exon, uses an alternate splice site in an internal exon, and differs in the 3' terminal region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AW295160, BC017247, BQ934904, DA113820
-
NR_146540.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an alternate internal exon, and differs in the 3' terminal region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL532525, AW295160, BC017247, BQ934904
-
NR_164755.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC096948, KF510733
-
NR_164756.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC096948, KF510733
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
77944055..77979501 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047433487.1 → XP_047289443.1 far upstream element-binding protein 1 isoform X4
- UniProtKB/TrEMBL
- A0A1Z1G4M2, A0A994J3Q8
-
XM_047433493.1 → XP_047289449.1 far upstream element-binding protein 1 isoform X10
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_047433485.1 → XP_047289441.1 far upstream element-binding protein 1 isoform X3
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_047433492.1 → XP_047289448.1 far upstream element-binding protein 1 isoform X9
- UniProtKB/Swiss-Prot
- Q12828, Q96AE4
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_047433489.1 → XP_047289445.1 far upstream element-binding protein 1 isoform X6
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_017002739.2 → XP_016858228.1 far upstream element-binding protein 1 isoform X1
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
- Conserved Domains (5) summary
-
- pfam09005
Location:623 → 643
- DUF1897; Domain of unknown function (DUF1897)
- cd22478
Location:119 → 193
- KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22481
Location:207 → 276
- KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22484
Location:297 → 364
- KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22487
Location:397 → 468
- KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
-
XM_047433488.1 → XP_047289444.1 far upstream element-binding protein 1 isoform X5
- UniProtKB/TrEMBL
- A0A1Z1G4M2, B4DT31, E9PCF5
-
XM_017002743.3 → XP_016858232.1 far upstream element-binding protein 1 isoform X8
- UniProtKB/TrEMBL
- A0A1Z1G4M2, A0A384MDX9
- Related
- ENSP00000294623.4, ENST00000294623.8
- Conserved Domains (5) summary
-
- pfam09005
Location:601 → 621
- DUF1897; Domain of unknown function (DUF1897)
- cd22478
Location:97 → 171
- KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22481
Location:185 → 254
- KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22484
Location:275 → 342
- KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22487
Location:375 → 446
- KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
-
XM_047433491.1 → XP_047289447.1 far upstream element-binding protein 1 isoform X7
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_017002740.3 → XP_016858229.1 far upstream element-binding protein 1 isoform X2
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
- Conserved Domains (5) summary
-
- pfam09005
Location:623 → 643
- DUF1897; Domain of unknown function (DUF1897)
- cd22478
Location:119 → 193
- KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22481
Location:207 → 276
- KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22484
Location:297 → 364
- KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
- cd22487
Location:397 → 468
- KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
RNA
-
XR_007064840.1 RNA Sequence
-
XR_007064839.1 RNA Sequence
-
XR_007064844.1 RNA Sequence
-
XR_007064843.1 RNA Sequence
-
XR_007064838.1 RNA Sequence
-
XR_007064842.1 RNA Sequence
-
XR_946790.4 RNA Sequence
-
XR_001737517.3 RNA Sequence
-
XR_001737514.3 RNA Sequence
-
XR_007064841.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
77782851..77818345 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054339463.1 → XP_054195438.1 far upstream element-binding protein 1 isoform X10
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_054339457.1 → XP_054195432.1 far upstream element-binding protein 1 isoform X4
- UniProtKB/TrEMBL
- A0A1Z1G4M2, A0A994J3Q8
-
XM_054339456.1 → XP_054195431.1 far upstream element-binding protein 1 isoform X3
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_054339462.1 → XP_054195437.1 far upstream element-binding protein 1 isoform X9
- UniProtKB/Swiss-Prot
- Q12828, Q96AE4
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_054339459.1 → XP_054195434.1 far upstream element-binding protein 1 isoform X6
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_054339458.1 → XP_054195433.1 far upstream element-binding protein 1 isoform X5
- UniProtKB/TrEMBL
- A0A1Z1G4M2, B4DT31, E9PCF5
-
XM_054339453.1 → XP_054195428.1 far upstream element-binding protein 1 isoform X1
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_054339461.1 → XP_054195436.1 far upstream element-binding protein 1 isoform X8
- UniProtKB/TrEMBL
- A0A1Z1G4M2, A0A384MDX9
-
XM_054339455.1 → XP_054195430.1 far upstream element-binding protein 1 isoform X3
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_054339452.1 → XP_054195427.1 far upstream element-binding protein 1 isoform X1
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_054339460.1 → XP_054195435.1 far upstream element-binding protein 1 isoform X7
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
-
XM_054339454.1 → XP_054195429.1 far upstream element-binding protein 1 isoform X2
- UniProtKB/TrEMBL
-
A0A1Z1G4M2
RNA
-
XR_008486196.1 RNA Sequence
-
XR_008486194.1 RNA Sequence
-
XR_008486195.1 RNA Sequence
-
XR_008486200.1 RNA Sequence
-
XR_008486193.1 RNA Sequence
-
XR_008486199.1 RNA Sequence
-
XR_008486190.1 RNA Sequence
-
XR_008486198.1 RNA Sequence
-
XR_008486189.1 RNA Sequence
-
XR_008486192.1 RNA Sequence
-
XR_008486191.1 RNA Sequence
-
XR_008486197.1 RNA Sequence