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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_011968.1 RefSeqGene
- Range
-
4845..101305
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001363864.1 → NP_001350793.1 B-cell lymphoma/leukemia 11A isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) has multiple differences in the coding region and 3' UTR, compared to variant 1. It encodes an isoform (4) with a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC007381, AC009970
- Consensus CDS
-
CCDS86845.1
- UniProtKB/TrEMBL
- A0A2U3TZJ5, B4DMK8
- Related
- ENSP00000351307.5, ENST00000358510.6
- Conserved Domains (4) summary
-
- sd00017
Location:345 → 365
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:710 → 730
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:709 → 730
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:357 → 382
- zf-H2C2_2; Zinc-finger double domain
-
NM_001365609.1 → NP_001352538.1 B-cell lymphoma/leukemia 11A isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (5) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AC007381, AF080216, AJ404611, AY228763
- Consensus CDS
-
CCDS92761.1
- UniProtKB/TrEMBL
-
B4DMK8
- Related
- ENSP00000338774.7, ENST00000335712.11
- Conserved Domains (3) summary
-
- sd00017
Location:710 → 730
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:709 → 730
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:357 → 382
- zf-H2C2_2; Zinc-finger double domain
-
NM_001405708.1 → NP_001392637.1 B-cell lymphoma/leukemia 11A isoform 1
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/Swiss-Prot
- D6W5D7, Q66LN6, Q86W14, Q8WU92, Q96JL6, Q9H163, Q9H164, Q9H165, Q9H3G9, Q9NWA7
- UniProtKB/TrEMBL
- B3KNX8, D6W5D9, D9YZW0
-
NM_001405709.1 → NP_001392638.1 B-cell lymphoma/leukemia 11A isoform 1
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/Swiss-Prot
- D6W5D7, Q66LN6, Q86W14, Q8WU92, Q96JL6, Q9H163, Q9H164, Q9H165, Q9H3G9, Q9NWA7
- UniProtKB/TrEMBL
- B3KNX8, D6W5D9, D9YZW0
-
NM_001405710.1 → NP_001392639.1 B-cell lymphoma/leukemia 11A isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B4DMK8
-
NM_001405711.1 → NP_001392640.1 B-cell lymphoma/leukemia 11A isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B4DMK8
-
NM_001405712.1 → NP_001392641.1 B-cell lymphoma/leukemia 11A isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B4DMK8
-
NM_001405713.1 → NP_001392642.1 B-cell lymphoma/leukemia 11A isoform 15
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
Q53TS1
-
NM_001405714.1 → NP_001392643.1 B-cell lymphoma/leukemia 11A isoform 15
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
Q53TS1
-
NM_001405715.1 → NP_001392644.1 B-cell lymphoma/leukemia 11A isoform 15
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
Q53TS1
-
NM_001405716.1 → NP_001392645.1 B-cell lymphoma/leukemia 11A isoform 7
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B4DMK8
-
NM_001405717.1 → NP_001392646.1 B-cell lymphoma/leukemia 11A isoform 16
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KRW8
-
NM_001405718.1 → NP_001392647.1 B-cell lymphoma/leukemia 11A isoform 16
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KRW8
-
NM_001405719.1 → NP_001392648.1 B-cell lymphoma/leukemia 11A isoform 8
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KNX8
-
NM_001405720.1 → NP_001392649.1 B-cell lymphoma/leukemia 11A isoform 17
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
Q53TS1
-
NM_001405721.1 → NP_001392650.1 B-cell lymphoma/leukemia 11A isoform 17
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
Q53TS1
-
NM_001405722.1 → NP_001392651.1 B-cell lymphoma/leukemia 11A isoform 18
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KNX8
-
NM_001405723.1 → NP_001392652.1 B-cell lymphoma/leukemia 11A isoform 18
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KNX8
-
NM_001405724.1 → NP_001392653.1 B-cell lymphoma/leukemia 11A isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KNX8
-
NM_001405725.1 → NP_001392654.1 B-cell lymphoma/leukemia 11A isoform 19
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KRW8
- Conserved Domains (3) summary
-
- sd00017
Location:592 → 612
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:591 → 612
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:239 → 264
- zf-H2C2_2; Zinc-finger double domain
-
NM_001405726.1 → NP_001392655.1 B-cell lymphoma/leukemia 11A isoform 19
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KRW8
- Conserved Domains (3) summary
-
- sd00017
Location:592 → 612
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:591 → 612
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:239 → 264
- zf-H2C2_2; Zinc-finger double domain
-
NM_001405727.1 → NP_001392656.1 B-cell lymphoma/leukemia 11A isoform 19
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KRW8
- Conserved Domains (3) summary
-
- sd00017
Location:592 → 612
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:591 → 612
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:239 → 264
- zf-H2C2_2; Zinc-finger double domain
-
NM_001405728.1 → NP_001392657.1 B-cell lymphoma/leukemia 11A isoform 19
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B3KRW8
- Conserved Domains (3) summary
-
- sd00017
Location:592 → 612
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:591 → 612
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:239 → 264
- zf-H2C2_2; Zinc-finger double domain
-
NM_001405729.1 → NP_001392658.1 B-cell lymphoma/leukemia 11A isoform 10
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
-
NM_001405730.1 → NP_001392659.1 B-cell lymphoma/leukemia 11A isoform 11
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
-
NM_001405731.1 → NP_001392660.1 B-cell lymphoma/leukemia 11A isoform 12
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
-
B4DT16
-
NM_001405732.1 → NP_001392661.1 B-cell lymphoma/leukemia 11A isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- Related
- ENSP00000488390.2, ENST00000489516.7
-
NM_001405733.1 → NP_001392662.1 B-cell lymphoma/leukemia 11A isoform 13
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
- UniProtKB/TrEMBL
- A0A2R8Y2E8, A0A2R8Y7B0
- Related
- ENSP00000493484.1, ENST00000642439.1
-
NM_001405734.1 → NP_001392663.1 B-cell lymphoma/leukemia 11A isoform 20
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
-
NM_001405735.1 → NP_001392664.1 B-cell lymphoma/leukemia 11A isoform 20
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
-
NM_001405736.1 → NP_001392665.1 B-cell lymphoma/leukemia 11A isoform 14
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
-
NM_018014.4 → NP_060484.2 B-cell lymphoma/leukemia 11A isoform 2
See identical proteins and their annotated locations for NP_060484.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) is also known as B-cell lymphoma/leukaemia 11A long form (BCL11A-L). It has a different 3' end coding and UTR region when compared to variant 1, and thus encodes an isoform (2) that contains a different and shorter C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AC007381, AC009970, AF080216, AJ404611, AJ404612, BC021098
- Consensus CDS
-
CCDS1861.1
- UniProtKB/TrEMBL
- B3KNX8, D9YZV9
- Related
- ENSP00000349300.4, ENST00000356842.9
- Conserved Domains (3) summary
-
- sd00017
Location:379 → 399
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:378 → 399
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:391 → 416
- zf-H2C2_2; Zinc-finger double domain
-
NM_022893.4 → NP_075044.2 B-cell lymphoma/leukemia 11A isoform 1
See identical proteins and their annotated locations for NP_075044.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) is also known as B-cell lymphoma/leukaemia 11A extra long form (BCL11A-XL). It encodes the longest isoform (1).
- Source sequence(s)
-
AB058712, AC009970, AF080216, AJ404611, AK001035, BG393787
- Consensus CDS
-
CCDS1862.1
- UniProtKB/Swiss-Prot
- D6W5D7, Q66LN6, Q86W14, Q8WU92, Q96JL6, Q9H163, Q9H164, Q9H165, Q9H3G9, Q9NWA7
- UniProtKB/TrEMBL
- B3KNX8, D6W5D9, D9YZW0
- Related
- ENSP00000496168.1, ENST00000642384.2
- Conserved Domains (3) summary
-
- sd00017
Location:744 → 764
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:743 → 764
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:391 → 416
- zf-H2C2_2; Zinc-finger double domain
-
NM_138559.2 → NP_612569.1 B-cell lymphoma/leukemia 11A isoform 3
See identical proteins and their annotated locations for NP_612569.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) is also known as B-cell lymphoma/leukaemia 11A short form (BCL11A-S). It lacks a large portion of the 3' coding region which introduces a frameshift, and it contains a different 3' UTR region when compared to variant 1. The encoded isoform (3) has a truncated and distinct C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AC007381, AC009970
- Consensus CDS
-
CCDS46295.1
- UniProtKB/Swiss-Prot
-
Q9H165
- Related
- ENSP00000352648.5, ENST00000359629.10
RNA
-
NR_175964.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC007381, AC009970
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
60450520..60553924 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024452963.2 → XP_024308731.1 B-cell lymphoma/leukemia 11A isoform X1
- UniProtKB/TrEMBL
-
Q53TS1
- Conserved Domains (3) summary
-
- sd00017
Location:692 → 712
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:691 → 712
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:339 → 364
- zf-H2C2_2; Zinc-finger double domain
-
XM_047444761.1 → XP_047300717.1 B-cell lymphoma/leukemia 11A isoform X2
- UniProtKB/TrEMBL
-
B3KRW8
- Conserved Domains (3) summary
-
- sd00017
Location:592 → 612
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:591 → 612
- zf-C2H2; Zinc finger, C2H2 type
- pfam13465
Location:239 → 264
- zf-H2C2_2; Zinc-finger double domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
60456325..60559762 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054342568.1 → XP_054198543.1 B-cell lymphoma/leukemia 11A isoform X1
- UniProtKB/TrEMBL
-
Q53TS1
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_138553.1: Suppressed sequence
- Description
- NM_138553.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.