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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_032271.3 → NP_115647.2 E3 ubiquitin-protein ligase TRAF7
See identical proteins and their annotated locations for NP_115647.2
Status: VALIDATED
- Source sequence(s)
-
AC009065, AK090624, AL136921, AW245178
- Consensus CDS
-
CCDS10461.1
- UniProtKB/Swiss-Prot
- Q6Q0C0, Q9H073
- UniProtKB/TrEMBL
-
B3KQY7
- Related
- ENSP00000318944.6, ENST00000326181.11
- Conserved Domains (6) summary
-
- PRK03918
Location:283 → 373
- PRK03918; DNA double-strand break repair ATPase Rad50
- cd00200
Location:388 → 668
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:443 → 477
- 7WD40; WD40 repeat [structural motif]
- cd16644
Location:129 → 165
- mRING-HC-C3HC3D_TRAF7; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 7 (TRAF7) and similar proteins
- cl17044
Location:282 → 322
- DD_cGKI; Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I
- cl19105
Location:207 → 281
- Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
2155782..2178129
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005255627.6 → XP_005255684.1 E3 ubiquitin-protein ligase TRAF7 isoform X1
- UniProtKB/TrEMBL
-
B3KQY7
- Conserved Domains (6) summary
-
- cl17044
Location:280 → 320
- DD_cGKI; Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I
- smart00184
Location:131 → 163
- RING; Ring finger
- COG2319
Location:378 → 666
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:386 → 666
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:441 → 475
- 7WD40; WD40 repeat [structural motif]
- cl19105
Location:207 → 278
- Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
-
XM_011522700.2 → XP_011521002.1 E3 ubiquitin-protein ligase TRAF7 isoform X2
See identical proteins and their annotated locations for XP_011521002.1
- UniProtKB/TrEMBL
-
B3KQY7
- Related
- ENSP00000515904.1, ENST00000704453.1
- Conserved Domains (6) summary
-
- cl17044
Location:253 → 293
- DD_cGKI; Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I
- smart00184
Location:102 → 134
- RING; Ring finger
- COG2319
Location:351 → 639
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:359 → 639
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:414 → 448
- 7WD40; WD40 repeat [structural motif]
- cl19105
Location:178 → 251
- Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
RNA
-
XR_007064922.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
2178244..2200598
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054314158.1 → XP_054170133.1 E3 ubiquitin-protein ligase TRAF7 isoform X1
- UniProtKB/TrEMBL
-
B3KQY7
RNA
-
XR_008484742.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_206835.1: Suppressed sequence
- Description
- NM_206835.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.