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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_012211.1 RefSeqGene
- Range
-
5001..129423
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001007098.3 → NP_001007099.1 sterol carrier protein 2 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has multiple differences in the coding region, compared to variant 1, one of which results in a translational frameshift. The resulting isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1. It is unknown whether this isoform (2) is proteolytically processed like isoforms 1 and 5.
- Source sequence(s)
-
AL445183, BC067108, DC330171
- Consensus CDS
-
CCDS41338.1
- UniProtKB/Swiss-Prot
-
P22307
- Related
- ENSP00000360568.5, ENST00000371513.9
- Conserved Domains (1) summary
-
- cl27752
Location:12 → 317
- PRK06064; acetyl-CoA acetyltransferase; Provisional
-
NM_001007099.3 → NP_001007100.1 sterol carrier protein 2 isoform 5 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) results from transcription initiation from a downstream promoter. This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (5, also known as SCP2) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AA664009, AB208789, AL445183, BC005911, M55421
- Consensus CDS
-
CCDS44149.1
- UniProtKB/Swiss-Prot
-
P22307
- UniProtKB/TrEMBL
-
Q59HG9
- Related
- ENSP00000396413.2, ENST00000435345.6
- Conserved Domains (1) summary
-
- pfam02036
Location:48 → 134
- SCP2; SCP-2 sterol transfer family
-
NM_001007100.3 → NP_001007101.1 sterol carrier protein 2 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) results from transcription initiation from a downstream promoter. This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (4) has a distinct N-terminus and is shorter than isoform 1. It is unknown whether this isoform (4) is proteolytically processed like isoforms 1 and 5.
- Source sequence(s)
-
AA664009, AB208789, AL445183, DB459183, M55421
- Consensus CDS
-
CCDS44150.1
- UniProtKB/Swiss-Prot
-
P22307
- UniProtKB/TrEMBL
-
Q59HG9
- Related
- ENSP00000406636.2, ENST00000430330.6
- Conserved Domains (1) summary
-
- pfam02036
Location:45 → 131
- SCP2; SCP-2 sterol transfer family
-
NM_001007250.3 → NP_001007251.1 sterol carrier protein 2 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) results from transcription initiation from a downstream promoter. This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (3) has a distinct N-terminus and is shorter than isoform 1. It is unknown whether this isoform (3) is proteolytically processed like isoforms 1 and 5.
- Source sequence(s)
-
AA664009, AB208789, AL445183, CA867670, M55421
- Consensus CDS
-
CCDS30719.1
- UniProtKB/Swiss-Prot
-
P22307
- UniProtKB/TrEMBL
-
Q59HG9
- Related
- ENSP00000386214.3, ENST00000408941.7
-
NM_001193599.2 → NP_001180528.1 sterol carrier protein 2 isoform 7
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (7) is shorter than isoform 1. It is unknown whether this isoform (7) is proteolytically processed like isoforms 1 and 5.
- Source sequence(s)
-
AA664009, AB208789, AK294631, AL445183, DC330171
- Consensus CDS
-
CCDS53318.1
- UniProtKB/TrEMBL
-
B2R761
- Related
- ENSP00000384569.2, ENST00000407246.6
- Conserved Domains (3) summary
-
- PRK08256
Location:12 → 380
- PRK08256; lipid-transfer protein; Provisional
- cd00826
Location:17 → 379
- nondecarbox_cond_enzymes; nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 ...
- pfam02036
Location:428 → 514
- SCP2; SCP-2 sterol transfer family
-
NM_001193600.2 → NP_001180529.1 sterol carrier protein 2 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (6) is shorter than isoform 1. It is unknown whether this isoform (6) is proteolytically processed like isoforms 1 and 5.
- Source sequence(s)
-
AA664009, AB208789, AC099677, AK308105, AL445183, DC330171
- Consensus CDS
-
CCDS53317.1
- UniProtKB/TrEMBL
-
B2R761
- Related
- ENSP00000360564.4, ENST00000371509.8
- Conserved Domains (3) summary
-
- PRK08256
Location:12 → 360
- PRK08256; lipid-transfer protein; Provisional
- pfam02036
Location:408 → 494
- SCP2; SCP-2 sterol transfer family
- cl09938
Location:17 → 359
- cond_enzymes; Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the ...
-
NM_001193617.2 → NP_001180546.1 sterol carrier protein 2 isoform 8
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (8) has a shorter N-terminus, compared to isoform 1. It is unknown whether this isoform (8) is proteolytically processed like isoforms 1 and 5.
- Source sequence(s)
-
AA664009, AB208789, AK295214, AL445183, DC330171
- Consensus CDS
-
CCDS53319.1
- UniProtKB/TrEMBL
-
B2R761
- Related
- ENSP00000434132.1, ENST00000528311.5
- Conserved Domains (2) summary
-
- pfam02036
Location:371 → 457
- SCP2; SCP-2 sterol transfer family
- cl09938
Location:1 → 322
- cond_enzymes; Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the ...
-
NM_001330587.2 → NP_001317516.1 sterol carrier protein 2 isoform 9
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (9) has a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AC099677, AL445183
- Consensus CDS
-
CCDS81325.1
- UniProtKB/TrEMBL
- E9PLD1, Q59HG9
- Related
- ENSP00000435194.1, ENST00000478631.6
- Conserved Domains (1) summary
-
- PRK08256
Location:12 → 361
- PRK08256; lipid-transfer protein; Provisional
-
NM_002979.5 → NP_002970.2 sterol carrier protein 2 isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1, also known as SCPx).
- Source sequence(s)
-
AA664009, AB208789, AK312856, AL445183, DC330171
- Consensus CDS
-
CCDS572.1
- UniProtKB/Swiss-Prot
- A6NM69, B4DGJ9, B4DHP6, C9JC79, D3DQ37, E1B6W5, F2Z3J1, P22307, Q15432, Q16622, Q5VVZ1, Q6NXF4, Q99430
- UniProtKB/TrEMBL
- A0A384NY87, B2R761
- Related
- ENSP00000360569.3, ENST00000371514.8
- Conserved Domains (2) summary
-
- PRK08256
Location:12 → 404
- PRK08256; lipid-transfer protein; Provisional
- pfam02036
Location:452 → 538
- SCP2; SCP-2 sterol transfer family
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
52927276..53051698
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005271103.5 → XP_005271160.1 sterol carrier protein 2 isoform X1
- UniProtKB/TrEMBL
-
B2R761
- Conserved Domains (2) summary
-
- PRK08256
Location:12 → 404
- PRK08256; lipid-transfer protein; Provisional
- cd00826
Location:17 → 403
- nondecarbox_cond_enzymes; nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 ...
-
XM_047427504.1 → XP_047283460.1 sterol carrier protein 2 isoform X1
- UniProtKB/TrEMBL
-
B2R761
-
XM_047427507.1 → XP_047283463.1 sterol carrier protein 2 isoform X2
- UniProtKB/TrEMBL
-
Q59HG9
-
XM_011541935.3 → XP_011540237.1 sterol carrier protein 2 isoform X2
- UniProtKB/TrEMBL
-
Q59HG9
- Conserved Domains (2) summary
-
- COG0183
Location:12 → 374
- PaaJ; Acetyl-CoA acetyltransferase [Lipid transport and metabolism]
- cd00826
Location:17 → 380
- nondecarbox_cond_enzymes; nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 ...
-
XM_047427506.1 → XP_047283462.1 sterol carrier protein 2 isoform X2
- UniProtKB/TrEMBL
-
Q59HG9
-
XM_047427508.1 → XP_047283464.1 sterol carrier protein 2 isoform X3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
52808787..52933201
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054338136.1 → XP_054194111.1 sterol carrier protein 2 isoform X1
- UniProtKB/TrEMBL
-
B2R761
-
XM_054338135.1 → XP_054194110.1 sterol carrier protein 2 isoform X1
- UniProtKB/TrEMBL
-
B2R761
-
XM_054338138.1 → XP_054194113.1 sterol carrier protein 2 isoform X2
- UniProtKB/TrEMBL
-
Q59HG9
-
XM_054338139.1 → XP_054194114.1 sterol carrier protein 2 isoform X2
- UniProtKB/TrEMBL
-
Q59HG9
-
XM_054338137.1 → XP_054194112.1 sterol carrier protein 2 isoform X2
- UniProtKB/TrEMBL
-
Q59HG9
-
XM_054338140.1 → XP_054194115.1 sterol carrier protein 2 isoform X3