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    LINC02687 long intergenic non-protein coding RNA 2687 [ Homo sapiens (human) ]

    Gene ID: 399886, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02687provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2687provided by HGNC
    Primary source
    HGNC:HGNC:54187
    See related
    Ensembl:ENSG00000255267 AllianceGenome:HGNC:54187
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC02696
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02687 in Genome Data Viewer
    Location:
    11p11.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (45371397..45388508)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (45528906..45546019)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (45392948..45410059)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45265182-45265682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45288476-45288976 Neighboring gene synaptotagmin 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45307287-45308073 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:45320242-45320786 Neighboring gene Sharpr-MPRA regulatory region 11350 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:45368824-45369362 Neighboring gene long intergenic non-protein coding RNA 2696 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:45400447-45400946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45406257-45406938 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:45432676-45433336 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:45433337-45433998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:45444460-45444960 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:45489326-45489860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:45489861-45490395 Neighboring gene uncharacterized LOC105376654 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 37 Neighboring gene uncharacterized LOC105376655

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    General gene information

    Markers

    Other Names

    • long intergenic non-protein coding RNA 2696

    Clone Names

    • FLJ41423

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_122071.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC018716
      Related
      ENST00000528390.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      45371397..45388508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      45528906..45546019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)