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    ZSWIM9 zinc finger SWIM-type containing 9 [ Homo sapiens (human) ]

    Gene ID: 374920, updated on 10-Dec-2024

    Summary

    Official Symbol
    ZSWIM9provided by HGNC
    Official Full Name
    zinc finger SWIM-type containing 9provided by HGNC
    Primary source
    HGNC:HGNC:34495
    See related
    Ensembl:ENSG00000185453 AllianceGenome:HGNC:34495
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C19orf68
    Summary
    Predicted to act upstream of or within hematopoietic progenitor cell differentiation. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in brain (RPKM 3.0), fat (RPKM 2.3) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ZSWIM9 in Genome Data Viewer
    Location:
    19q13.33
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (48170680..48197620)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (51164635..51191690)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (48673937..48700877)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:48564610-48565203 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:48565204-48565796 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:48565797-48566389 Neighboring gene phospholipase A2 group IVC Neighboring gene PLA2G4C antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14871 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10871 Neighboring gene DNA ligase 1 Neighboring gene uncharacterized LOC107985293 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:48673083-48673742 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10874 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14872 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:48691653-48691885 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:48699771-48700283 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14873 Neighboring gene uncharacterized LOC124904734 Neighboring gene caspase recruitment domain family member 8 Neighboring gene vomeronasal 1 receptor 97 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    uncharacterized protein ZSWIM9
    Names
    uncharacterized protein C19orf68

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199341.4NP_955373.3  uncharacterized protein ZSWIM9

      See identical proteins and their annotated locations for NP_955373.3

      Status: VALIDATED

      Source sequence(s)
      AC011466, BC043386
      Consensus CDS
      CCDS74411.1
      UniProtKB/Swiss-Prot
      Q86XI8
      Related
      ENSP00000480314.1, ENST00000614654.2
      Conserved Domains (1) summary
      pfam03101
      Location:97128
      FAR1; FAR1 DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      48170680..48197620
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005259449.4XP_005259506.1  uncharacterized protein ZSWIM9 isoform X2

      Conserved Domains (1) summary
      pfam03101
      Location:110141
      FAR1; FAR1 DNA-binding domain
    2. XM_006723204.4XP_006723267.1  uncharacterized protein ZSWIM9 isoform X1

      Conserved Domains (1) summary
      pfam03101
      Location:124155
      FAR1; FAR1 DNA-binding domain
    3. XM_006723205.3XP_006723268.1  uncharacterized protein ZSWIM9 isoform X3

      See identical proteins and their annotated locations for XP_006723268.1

      Conserved Domains (1) summary
      pfam03101
      Location:97128
      FAR1; FAR1 DNA-binding domain
    4. XM_011526936.3XP_011525238.1  uncharacterized protein ZSWIM9 isoform X4

      Conserved Domains (1) summary
      pfam03101
      Location:956
      FAR1; FAR1 DNA-binding domain
    5. XM_047438788.1XP_047294744.1  uncharacterized protein ZSWIM9 isoform X5

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      51164635..51191690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054320933.1XP_054176908.1  uncharacterized protein ZSWIM9 isoform X3

    2. XM_054320931.1XP_054176906.1  uncharacterized protein ZSWIM9 isoform X2

    3. XM_054320930.1XP_054176905.1  uncharacterized protein ZSWIM9 isoform X1

    4. XM_054320932.1XP_054176907.1  uncharacterized protein ZSWIM9 isoform X4

    5. XM_054320934.1XP_054176909.1  uncharacterized protein ZSWIM9 isoform X5