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    LOC100505502 POM121 transmembrane nucleoporin like, pseudogene [ Homo sapiens (human) ]

    Gene ID: 100505502, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100505502
    Gene description
    POM121 transmembrane nucleoporin like, pseudogene
    See related
    Ensembl:ENSG00000285781
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Orthologs
    all
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    Genomic context

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    See LOC100505502 in Genome Data Viewer
    Location:
    10p11.22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (31362799..31364049, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (31392544..31393794, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (31651728..31652978, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2274 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2275 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2276 Neighboring gene ZEB1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3236 Neighboring gene zinc finger E-box binding homeobox 1 Neighboring gene serine palmitoyltransferase long chain base subunit 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3237 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3238 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3239 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:31756459-31756960 Neighboring gene Sharpr-MPRA regulatory region 3516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3240 Neighboring gene MPRA-validated peak919 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:31797084-31797592 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:31797593-31798099 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31873359-31873859 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2277 Neighboring gene uncharacterized LOC124906892 Neighboring gene uncharacterized LOC105376484 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3241 Neighboring gene glutamate dehydrogenase 1 pseudogene 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ37424

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_076682.1 

      Range
      101..1351
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      31362799..31364049 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      31392544..31393794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001368169.1: Suppressed sequence

      Description
      NM_001368169.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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