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    ZNF813 zinc finger protein 813 [ Homo sapiens (human) ]

    Gene ID: 126017, updated on 9-Dec-2024

    Summary

    Official Symbol
    ZNF813provided by HGNC
    Official Full Name
    zinc finger protein 813provided by HGNC
    Primary source
    HGNC:HGNC:33257
    See related
    Ensembl:ENSG00000198346 AllianceGenome:HGNC:33257
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in prostate (RPKM 3.4), placenta (RPKM 2.4) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See ZNF813 in Genome Data Viewer
    Location:
    19q13.42
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (53467733..53496255)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (56547295..56575852)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (53970987..53999509)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ZNF765-ZNF761 readthrough Neighboring gene Sharpr-MPRA regulatory region 10215 Neighboring gene tropomyosin 3 pseudogene 9 Neighboring gene zinc finger protein 761 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11011 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:53971207-53971768 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:53971769-53972331 Neighboring gene vomeronasal 1 receptor 102 pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr19:53995337-53996536 Neighboring gene tropomyosin 3 pseudogene 6 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:54008197-54008422 Neighboring gene ribosomal protein L39 pseudogene 37 Neighboring gene vomeronasal 1 receptor 103 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:54022978-54023752 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54023753-54024526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54024527-54025300 Neighboring gene zinc finger protein 331 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:54041127-54041643 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15071 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:54080110-54081309 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54097943-54098874 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:54098875-54099804 Neighboring gene solute carrier family 7 member 3 pseudogene Neighboring gene divergent-paired related homeobox

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ16542, FLJ34141

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004301.4NP_001004301.2  zinc finger protein 813

      See identical proteins and their annotated locations for NP_001004301.2

      Status: VALIDATED

      Source sequence(s)
      AC022137, AK131422, DB066632, DB235327
      Consensus CDS
      CCDS46172.1
      UniProtKB/Swiss-Prot
      Q6ZN06
      Related
      ENSP00000379684.4, ENST00000396403.9
      Conserved Domains (5) summary
      smart00349
      Location:848
      KRAB; krueppel associated box
      COG5048
      Location:191602
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:525545
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:847
      KRAB; KRAB box
      pfam13465
      Location:313338
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      53467733..53496255
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      56547295..56575852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)