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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009165.3 RefSeqGene
- Range
-
23681..64263
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_018451.5 → NP_060921.3 centromere protein J
See identical proteins and their annotated locations for NP_060921.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the protein coding transcript.
- Source sequence(s)
-
AL354798
- Consensus CDS
-
CCDS9310.1
- UniProtKB/Swiss-Prot
- Q2KHM6, Q5JPD5, Q5T6R5, Q96KS5, Q9C067, Q9HC77
- UniProtKB/TrEMBL
-
A8K8P1
- Related
- ENSP00000371308.4, ENST00000381884.9
- Conserved Domains (2) summary
-
- pfam07202
Location:1161 → 1335
- Tcp10_C; T-complex protein 10 C-terminus
- pfam10211
Location:921 → 1012
- Ax_dynein_light; Axonemal dynein light chain
RNA
-
NR_047594.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an additional exon compared to variant 1. It is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL354798
-
NR_047595.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an exon compared to variant 1. It is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL354798
- Related
-
ENST00000616936.4
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000013.11 Reference GRCh38.p14 Primary Assembly
- Range
-
24882279..24934000 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047430483.1 → XP_047286439.1 centromere protein J isoform X1
- UniProtKB/Swiss-Prot
- Q2KHM6, Q5JPD5, Q5T6R5, Q96KS5, Q9C067, Q9HC77
- UniProtKB/TrEMBL
-
A8K8P1
-
XM_011535149.3 → XP_011533451.1 centromere protein J isoform X2
- UniProtKB/TrEMBL
- F6VUX8, Q2KHM5
- Related
- ENSP00000441090.2, ENST00000545981.6
- Conserved Domains (1) summary
-
- pfam10211
Location:921 → 1012
- Ax_dynein_light; Axonemal dynein light chain
-
XM_047430484.1 → XP_047286440.1 centromere protein J isoform X2
- UniProtKB/TrEMBL
- F6VUX8, Q2KHM5
-
XM_011535150.3 → XP_011533452.1 centromere protein J isoform X3
- UniProtKB/TrEMBL
-
Q2KHM5
- Conserved Domains (1) summary
-
- pfam10211
Location:921 → 1012
- Ax_dynein_light; Axonemal dynein light chain
-
XM_047430485.1 → XP_047286441.1 centromere protein J isoform X5
- UniProtKB/TrEMBL
-
Q2KHM5
-
XM_017020673.2 → XP_016876162.1 centromere protein J isoform X4
- UniProtKB/TrEMBL
-
Q2KHM5
RNA
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XR_941627.2 RNA Sequence
-
XR_941628.2 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060937.1 Alternate T2T-CHM13v2.0
- Range
-
24090519..24142252 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054374750.1 → XP_054230725.1 centromere protein J isoform X1
- UniProtKB/Swiss-Prot
- Q2KHM6, Q5JPD5, Q5T6R5, Q96KS5, Q9C067, Q9HC77
- UniProtKB/TrEMBL
-
A8K8P1
-
XM_054374751.1 → XP_054230726.1 centromere protein J isoform X2
- UniProtKB/TrEMBL
-
Q2KHM5
-
XM_054374752.1 → XP_054230727.1 centromere protein J isoform X2
- UniProtKB/TrEMBL
-
Q2KHM5
-
XM_054374753.1 → XP_054230728.1 centromere protein J isoform X3
- UniProtKB/TrEMBL
-
Q2KHM5
-
XM_054374755.1 → XP_054230730.1 centromere protein J isoform X5
- UniProtKB/TrEMBL
-
Q2KHM5
-
XM_054374754.1 → XP_054230729.1 centromere protein J isoform X4
- UniProtKB/TrEMBL
-
Q2KHM5
RNA
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XR_008488775.1 RNA Sequence
-
XR_008488776.1 RNA Sequence