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    HNRNPKP3 heterogeneous nuclear ribonucleoprotein K pseudogene 3 [ Homo sapiens (human) ]

    Gene ID: 399881, updated on 10-Dec-2024

    Summary

    Official Symbol
    HNRNPKP3provided by HGNC
    Official Full Name
    heterogeneous nuclear ribonucleoprotein K pseudogene 3provided by HGNC
    Primary source
    HGNC:HGNC:42376
    See related
    Ensembl:ENSG00000293312 AllianceGenome:HGNC:42376
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See HNRNPKP3 in Genome Data Viewer
    Location:
    11p12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (43261504..43269369, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (43416727..43424619, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (43283054..43290919, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene mannosidase alpha class 1B member 1 pseudogene Neighboring gene uncharacterized LOC124902662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:43121800-43122300 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4639 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:43233497-43234097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:43234098-43234697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:43290423-43290924 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:43290925-43291424 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:43333299-43334074 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:43372671-43373334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3267 Neighboring gene apoptosis inhibitor 5 Neighboring gene tetratricopeptide repeat domain 17 Neighboring gene RN7SK pseudogene 287

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033868.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090588
      Related
      ENST00000511537.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      43261504..43269369 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      43416727..43424619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)