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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001001980.3 → NP_001001980.2 LIM and calponin homology domains-containing protein 1 isoform 1
See identical proteins and their annotated locations for NP_001001980.2
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
- Consensus CDS
-
CCDS39102.1
- UniProtKB/Swiss-Prot
- Q3UH68, Q6DIC3, Q80TK1
- UniProtKB/TrEMBL
-
A0A5F8MPN3
- Related
- ENSMUSP00000098723.5, ENSMUST00000101164.11
- Conserved Domains (4) summary
-
- smart00132
Location:987 → 1044
- LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
- cd00014
Location:26 → 138
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam15949
Location:250 → 417
- DUF4757; Domain of unknown function (DUF4757)
- cl20817
Location:771 → 808
- GBP_C; Guanylate-binding protein, C-terminal domain
-
NM_001256122.3 → NP_001243051.1 LIM and calponin homology domains-containing protein 1 isoform 2
See identical proteins and their annotated locations for NP_001243051.1
Status: VALIDATED
- Source sequence(s)
-
AC119834
- Consensus CDS
-
CCDS57347.1
- UniProtKB/TrEMBL
-
A0A5F8MPN3
- Related
- ENSMUSP00000043163.8, ENSMUST00000038188.14
- Conserved Domains (3) summary
-
- smart00132
Location:831 → 888
- LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
- pfam15949
Location:94 → 261
- DUF4757; Domain of unknown function (DUF4757)
- cl20817
Location:615 → 652
- GBP_C; Guanylate-binding protein, C-terminal domain
-
NM_001368863.1 → NP_001355792.1 LIM and calponin homology domains-containing protein 1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC158994
- Consensus CDS
-
CCDS89925.1
- UniProtKB/TrEMBL
- A0A5F8MPN3, D3Z589
- Conserved Domains (3) summary
-
- smart00132
Location:828 → 885
- LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
- pfam15949
Location:91 → 259
- DUF4757; Domain of unknown function (DUF4757)
- cl20817
Location:612 → 649
- GBP_C; Guanylate-binding protein, C-terminal domain
-
NM_001401410.1 → NP_001388339.1 LIM and calponin homology domains-containing protein 1 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
- UniProtKB/TrEMBL
-
A0A571BG24
- Related
- ENSMUSP00000158661.2, ENSMUST00000238785.2
-
NM_001401411.1 → NP_001388340.1 LIM and calponin homology domains-containing protein 1 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
- UniProtKB/TrEMBL
-
A0A5F8MPN3
-
NM_001401412.1 → NP_001388341.1 LIM and calponin homology domains-containing protein 1 isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
- UniProtKB/TrEMBL
-
A0A5F8MPN3
-
NM_001401413.1 → NP_001388342.1 LIM and calponin homology domains-containing protein 1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
- UniProtKB/TrEMBL
- A0A5F8MPN3, D3Z589
-
NM_001401414.1 → NP_001388343.1 LIM and calponin homology domains-containing protein 1 isoform 8
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
- UniProtKB/TrEMBL
-
A0A5F8MPN3
-
NM_001401415.1 → NP_001388344.1 LIM and calponin homology domains-containing protein 1 isoform 9
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
- UniProtKB/TrEMBL
-
A0A5F8MPN3
-
NM_001401416.1 → NP_001388345.1 LIM and calponin homology domains-containing protein 1 isoform 10
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
-
NM_001401417.1 → NP_001388346.1 LIM and calponin homology domains-containing protein 1 isoform 11
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
-
NM_001401418.1 → NP_001388347.1 LIM and calponin homology domains-containing protein 1 isoform 12
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
- UniProtKB/TrEMBL
- A0A5F8MPN3, D3YU22
- Related
- ENSMUSP00000112732.2, ENSMUST00000118242.8
-
NM_001401419.1 → NP_001388348.1 LIM and calponin homology domains-containing protein 1 isoform 13
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
-
NM_001401420.1 → NP_001388349.1 LIM and calponin homology domains-containing protein 1 isoform 14
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC158994
-
NM_001401421.1 → NP_001388350.1 LIM and calponin homology domains-containing protein 1 isoform 15
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC158994
-
NM_001401422.1 → NP_001388351.1 LIM and calponin homology domains-containing protein 1 isoform 16
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC158994
- UniProtKB/TrEMBL
-
A0A5F8MPN3
-
NM_001401423.1 → NP_001388352.1 LIM and calponin homology domains-containing protein 1 isoform 17
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC158994
- UniProtKB/TrEMBL
-
A0A5F8MPN3
-
NM_001401424.1 → NP_001388353.1 LIM and calponin homology domains-containing protein 1 isoform 18
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC158994
- UniProtKB/TrEMBL
-
A0A5F8MPN3
-
NM_001401425.1 → NP_001388354.1 LIM and calponin homology domains-containing protein 1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC158994
- UniProtKB/TrEMBL
- A0A5F8MPN3, D3Z589
- Related
- ENSMUSP00000113544.3, ENSMUST00000117601.8
-
NM_001401426.1 → NP_001388355.1 LIM and calponin homology domains-containing protein 1 isoform 19
Status: VALIDATED
- Source sequence(s)
-
AC119834
- UniProtKB/TrEMBL
-
D3YU59
-
NM_001401427.1 → NP_001388356.1 LIM and calponin homology domains-containing protein 1 isoform 20
Status: VALIDATED
- Source sequence(s)
-
AC119834
- UniProtKB/TrEMBL
-
A0A5F8MPN3
-
NM_001403508.1 → NP_001390437.1 LIM and calponin homology domains-containing protein 1 isoform 7
Status: VALIDATED
- Source sequence(s)
-
AC119834
- UniProtKB/TrEMBL
-
A0A5F8MPN3
-
NM_001403509.1 → NP_001390438.1 LIM and calponin homology domains-containing protein 1 isoform 21
Status: VALIDATED
- Source sequence(s)
-
AC119834
- UniProtKB/TrEMBL
-
D3YU59
RNA
-
NR_174705.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC119834, AC152416, AC158994
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000071.7 Reference GRCm39 C57BL/6J
- Range
-
66903232..67214502
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036165606.1 → XP_036021499.1 LIM and calponin homology domains-containing protein 1 isoform X7
- UniProtKB/TrEMBL
-
A0A5F8MPN3
- Conserved Domains (4) summary
-
- smart00132
Location:957 → 1014
- LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
- pfam15949
Location:220 → 388
- DUF4757; Domain of unknown function (DUF4757)
- cl00030
Location:3 → 110
- CH_SF; calponin homology (CH) domain superfamily
- cl20817
Location:741 → 778
- GBP_C; Guanylate-binding protein, C-terminal domain
-
XM_036165607.1 → XP_036021500.1 LIM and calponin homology domains-containing protein 1 isoform X8
- UniProtKB/TrEMBL
-
A0A5F8MPN3
- Conserved Domains (4) summary
-
- smart00132
Location:945 → 1002
- LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
- pfam15949
Location:220 → 376
- DUF4757; Domain of unknown function (DUF4757)
- cl00030
Location:3 → 110
- CH_SF; calponin homology (CH) domain superfamily
- cl20817
Location:729 → 766
- GBP_C; Guanylate-binding protein, C-terminal domain
-
XM_036165604.1 → XP_036021497.1 LIM and calponin homology domains-containing protein 1 isoform X5
- UniProtKB/TrEMBL
- A0A5F8MPN3, D3Z589
- Conserved Domains (3) summary
-
- smart00132
Location:828 → 885
- LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
- pfam15949
Location:91 → 259
- DUF4757; Domain of unknown function (DUF4757)
- cl20817
Location:612 → 649
- GBP_C; Guanylate-binding protein, C-terminal domain
-
XM_036165601.1 → XP_036021494.1 LIM and calponin homology domains-containing protein 1 isoform X2
- Conserved Domains (2) summary
-
- pfam15949
Location:580 → 713
- DUF4757; Domain of unknown function (DUF4757)
- cl20817
Location:1066 → 1103
- GBP_C; Guanylate-binding protein, C-terminal domain
-
XM_036165612.1 → XP_036021505.1 LIM and calponin homology domains-containing protein 1 isoform X12
- UniProtKB/TrEMBL
- D3YU59, Q8CGB7
- Related
- ENSMUSP00000112651.3, ENSMUST00000119854.8
- Conserved Domains (3) summary
-
- smart00132
Location:726 → 783
- LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
- pfam15949
Location:1 → 157
- DUF4757; Domain of unknown function (DUF4757)
- cl20817
Location:510 → 547
- GBP_C; Guanylate-binding protein, C-terminal domain
-
XM_036165602.1 → XP_036021495.1 LIM and calponin homology domains-containing protein 1 isoform X3
- Conserved Domains (3) summary
-
- smart00132
Location:1285 → 1342
- LIM; Zinc-binding domain present in Lin-11, Isl-1, Mec-3
- pfam15949
Location:583 → 716
- DUF4757; Domain of unknown function (DUF4757)
- cl20817
Location:1069 → 1106
- GBP_C; Guanylate-binding protein, C-terminal domain