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    GOLGA6D golgin A6 family member D [ Homo sapiens (human) ]

    Gene ID: 653643, updated on 10-Dec-2024

    Summary

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    Official Symbol
    GOLGA6Dprovided by HGNC
    Official Full Name
    golgin A6 family member Dprovided by HGNC
    Primary source
    HGNC:HGNC:32204
    See related
    Ensembl:ENSG00000140478 AllianceGenome:HGNC:32204
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be involved in Golgi organization. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis (RPKM 15.6) See more
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    Genomic context

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    See GOLGA6D in Genome Data Viewer
    Location:
    15q24.2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (75276127..75295530)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (73146190..73165591)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (75575176..75587871)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:75546366-75546894 Neighboring gene NIFK pseudogene 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:75551293-75551823 Neighboring gene golgin A6 family member C Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:75558211-75559074 Neighboring gene RNA, 7SL, cytoplasmic 489, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:75568091-75568622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:75569155-75569686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:75586327-75587004 Neighboring gene RNA, 7SL, cytoplasmic 327, pseudogene Neighboring gene dynamin 1 pseudogene 34 Neighboring gene acidic nuclear phosphoprotein 32 family member B pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
    2. In-Depth In Vivo Crosslinking in Minutes by a Compact, Membrane-Permeable, and Alkynyl-Enrichable Crosslinker. Gao H, et al. Anal Chem, 2022 May 31. PMID 35575683
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in Golgi organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi cis cisterna IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in Golgi cisterna membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cis-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    golgin subfamily A member 6D
    Names
    golgi autoantigen, golgin subfamily a, 6D
    putative golgin subfamily A member 6D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145224.3 → NP_001138696.1  golgin subfamily A member 6D

      See identical proteins and their annotated locations for NP_001138696.1

      Status: VALIDATED

      Source sequence(s)
      AC068338
      Consensus CDS
      CCDS45308.1
      UniProtKB/Swiss-Prot
      P0CG33
      UniProtKB/TrEMBL
      A2VDJ1
      Related
      ENSP00000391085.3, ENST00000434739.4
      Conserved Domains (2) summary
      pfam01496
      Location:264 → 346
      V_ATPase_I; V-type ATPase 116kDa subunit family
      pfam15070
      Location:217 → 686
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      75276127..75295530
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047432965.1 → XP_047288921.1  golgin subfamily A member 6D isoform X1

      UniProtKB/Swiss-Prot
      P0CG33
      UniProtKB/TrEMBL
      A2VDJ1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      73146190..73165591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054378659.1 → XP_054234634.1  golgin subfamily A member 6D isoform X1

      UniProtKB/Swiss-Prot
      P0CG33
      UniProtKB/TrEMBL
      A2VDJ1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CG33.1 GenPept UniProtKB/Swiss-Prot:P0CG33

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials