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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001178137.2 → NP_001171608.1 cytoplasmic polyadenylation element-binding protein 3 isoform 2
See identical proteins and their annotated locations for NP_001171608.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and uses two different splice sites in the coding region, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1.
- Source sequence(s)
-
AB023157, AL365398, BC036444, BU785463, DA697430
- Consensus CDS
-
CCDS53553.1
- UniProtKB/TrEMBL
-
Q5QP71
- Related
- ENSP00000398310.2, ENST00000412050.8
- Conserved Domains (4) summary
-
- COG0724
Location:423 → 589
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cd12724
Location:427 → 518
- RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:535 → 615
- RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- pfam16366
Location:610 → 671
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
-
NM_014912.5 → NP_055727.3 cytoplasmic polyadenylation element-binding protein 3 isoform 1
See identical proteins and their annotated locations for NP_055727.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and it encodes the longer protein (isoform 1).
- Source sequence(s)
-
AB023157, AK127060, AL365398, BC036444, BU785463
- Consensus CDS
-
CCDS31246.1
- UniProtKB/Swiss-Prot
- Q5T389, Q8NE35, Q9NQJ7, Q9Y2E9
- Related
- ENSP00000265997.4, ENST00000265997.5
- Conserved Domains (4) summary
-
- COG0724
Location:437 → 603
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cd12724
Location:441 → 532
- RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:549 → 629
- RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- pfam16366
Location:624 → 685
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000010.11 Reference GRCh38.p14 Primary Assembly
- Range
-
92046692..92291233 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047424810.1 → XP_047280766.1 cytoplasmic polyadenylation element-binding protein 3 isoform X2
-
XM_024447895.2 → XP_024303663.1 cytoplasmic polyadenylation element-binding protein 3 isoform X1
- Conserved Domains (3) summary
-
- pfam16366
Location:641 → 702
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
- cd12724
Location:458 → 549
- RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:566 → 646
- RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
-
XM_011539517.3 → XP_011537819.1 cytoplasmic polyadenylation element-binding protein 3 isoform X5
- Conserved Domains (4) summary
-
- COG0724
Location:404 → 570
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cd12724
Location:408 → 499
- RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:516 → 596
- RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- pfam16366
Location:591 → 652
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
-
XM_011539520.3 → XP_011537822.1 cytoplasmic polyadenylation element-binding protein 3 isoform X9
- Conserved Domains (3) summary
-
- cd12726
Location:449 → 529
- RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- pfam16366
Location:524 → 585
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
- cl17169
Location:386 → 432
- RRM_SF; RNA recognition motif (RRM) superfamily
-
XM_005269630.5 → XP_005269687.1 cytoplasmic polyadenylation element-binding protein 3 isoform X4
See identical proteins and their annotated locations for XP_005269687.1
- UniProtKB/TrEMBL
-
Q5QP71
- Conserved Domains (4) summary
-
- COG0724
Location:423 → 589
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cd12724
Location:427 → 518
- RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:535 → 615
- RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- pfam16366
Location:610 → 671
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
-
XM_011539515.3 → XP_011537817.1 cytoplasmic polyadenylation element-binding protein 3 isoform X3
- Conserved Domains (4) summary
-
- COG0724
Location:431 → 597
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cd12724
Location:435 → 526
- RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:543 → 623
- RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- pfam16366
Location:618 → 679
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
-
XM_011539519.3 → XP_011537821.1 cytoplasmic polyadenylation element-binding protein 3 isoform X8
- Conserved Domains (3) summary
-
- cd12726
Location:472 → 552
- RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- pfam16366
Location:547 → 608
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
- cl17169
Location:409 → 455
- RRM_SF; RNA recognition motif (RRM) superfamily
-
XM_011539514.3 → XP_011537816.1 cytoplasmic polyadenylation element-binding protein 3 isoform X2
- Conserved Domains (4) summary
-
- COG0724
Location:446 → 612
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cd12724
Location:450 → 541
- RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:558 → 638
- RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- pfam16366
Location:633 → 694
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
-
XM_006717715.4 → XP_006717778.1 cytoplasmic polyadenylation element-binding protein 3 isoform X1
See identical proteins and their annotated locations for XP_006717778.1
- Conserved Domains (3) summary
-
- pfam16366
Location:641 → 702
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
- cd12724
Location:458 → 549
- RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:566 → 646
- RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
-
XM_047424814.1 → XP_047280770.1 cytoplasmic polyadenylation element-binding protein 3 isoform X4
- UniProtKB/TrEMBL
-
Q5QP71
-
XM_047424812.1 → XP_047280768.1 cytoplasmic polyadenylation element-binding protein 3 isoform X3
-
XM_047424809.1 → XP_047280765.1 cytoplasmic polyadenylation element-binding protein 3 isoform X2
-
XM_047424807.1 → XP_047280763.1 cytoplasmic polyadenylation element-binding protein 3 isoform X1
-
XM_024447894.2 → XP_024303662.1 cytoplasmic polyadenylation element-binding protein 3 isoform X1
- Conserved Domains (3) summary
-
- pfam16366
Location:641 → 702
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
- cd12724
Location:458 → 549
- RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:566 → 646
- RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
-
XM_047424813.1 → XP_047280769.1 cytoplasmic polyadenylation element-binding protein 3 isoform X4
- UniProtKB/TrEMBL
-
Q5QP71
-
XM_047424818.1 → XP_047280774.1 cytoplasmic polyadenylation element-binding protein 3 isoform X8
-
XM_047424808.1 → XP_047280764.1 cytoplasmic polyadenylation element-binding protein 3 isoform X2
-
XM_024447893.2 → XP_024303661.1 cytoplasmic polyadenylation element-binding protein 3 isoform X1
- Conserved Domains (3) summary
-
- pfam16366
Location:641 → 702
- CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
- cd12724
Location:458 → 549
- RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:566 → 646
- RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
-
XM_017015927.2 → XP_016871416.1 cytoplasmic polyadenylation element-binding protein 3 isoform X12
- UniProtKB/TrEMBL
-
A0A590UJI5
-
XM_047424815.1 → XP_047280771.1 cytoplasmic polyadenylation element-binding protein 3 isoform X7
-
XM_011539518.3 → XP_011537820.1 cytoplasmic polyadenylation element-binding protein 3 isoform X6
- Conserved Domains (3) summary
-
- COG0724
Location:454 → 620
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cd12724
Location:458 → 549
- RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
- cd12726
Location:566 → 640
- RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
-
XM_047424816.1 → XP_047280772.1 cytoplasmic polyadenylation element-binding protein 3 isoform X7
-
XM_047424820.1 → XP_047280776.1 cytoplasmic polyadenylation element-binding protein 3 isoform X11
-
XM_047424819.1 → XP_047280775.1 cytoplasmic polyadenylation element-binding protein 3 isoform X10
Alternate T2T-CHM13v2.0
Genomic
-
NC_060934.1 Alternate T2T-CHM13v2.0
- Range
-
92929099..93173600 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054365181.1 → XP_054221156.1 cytoplasmic polyadenylation element-binding protein 3 isoform X2
-
XM_054365178.1 → XP_054221153.1 cytoplasmic polyadenylation element-binding protein 3 isoform X1
-
XM_054365185.1 → XP_054221160.1 cytoplasmic polyadenylation element-binding protein 3 isoform X5
-
XM_054365191.1 → XP_054221166.1 cytoplasmic polyadenylation element-binding protein 3 isoform X9
-
XM_054365183.1 → XP_054221158.1 cytoplasmic polyadenylation element-binding protein 3 isoform X4
- UniProtKB/TrEMBL
-
Q5QP71
-
XM_054365182.1 → XP_054221157.1 cytoplasmic polyadenylation element-binding protein 3 isoform X3
-
XM_054365189.1 → XP_054221164.1 cytoplasmic polyadenylation element-binding protein 3 isoform X8
-
XM_054365179.1 → XP_054221154.1 cytoplasmic polyadenylation element-binding protein 3 isoform X2
-
XM_054365175.1 → XP_054221150.1 cytoplasmic polyadenylation element-binding protein 3 isoform X1
-
XM_054365177.1 → XP_054221152.1 cytoplasmic polyadenylation element-binding protein 3 isoform X1
-
XM_054365184.1 → XP_054221159.1 cytoplasmic polyadenylation element-binding protein 3 isoform X4
- UniProtKB/TrEMBL
-
Q5QP71
-
XM_054365190.1 → XP_054221165.1 cytoplasmic polyadenylation element-binding protein 3 isoform X8
-
XM_054365180.1 → XP_054221155.1 cytoplasmic polyadenylation element-binding protein 3 isoform X2
-
XM_054365176.1 → XP_054221151.1 cytoplasmic polyadenylation element-binding protein 3 isoform X1
-
XM_054365194.1 → XP_054221169.1 cytoplasmic polyadenylation element-binding protein 3 isoform X12
- UniProtKB/TrEMBL
-
A0A590UJI5
-
XM_054365187.1 → XP_054221162.1 cytoplasmic polyadenylation element-binding protein 3 isoform X7
-
XM_054365186.1 → XP_054221161.1 cytoplasmic polyadenylation element-binding protein 3 isoform X6
-
XM_054365188.1 → XP_054221163.1 cytoplasmic polyadenylation element-binding protein 3 isoform X7
-
XM_054365193.1 → XP_054221168.1 cytoplasmic polyadenylation element-binding protein 3 isoform X11
-
XM_054365192.1 → XP_054221167.1 cytoplasmic polyadenylation element-binding protein 3 isoform X10