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    K09F6.7 RING-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 187234, updated on 9-Dec-2024

    Summary

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    Official Symbol
    K09F6.7
    Official Full Name
    RING-type domain-containing protein
    Primary source
    WormBase:WBGene00019590
    Locus tag
    CELE_K09F6.7
    See related
    AllianceGenome:WB:WBGene00019590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human TRIM13 (tripartite motif containing 13) and TRIM59 (tripartite motif containing 59). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See K09F6.7 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    6
    Sequence:
    Chromosome: II; NC_003280.10 (2290917..2292127, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene DNA-directed DNA polymerase Neighboring gene Nuclear receptor domain-containing protein Neighboring gene F-box C protein Neighboring gene Cilia- and flagella-associated protein 299

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RING-type domain-containing protein
    NP_494227.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      2290917..2292127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_061826.4 → NP_494227.1  RING-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494227.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16734
      Conserved Domains (3) summary
      COG5432
      Location:2 → 114
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
      cd00162
      Location:6 → 50
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl17238
      Location:5 → 51
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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