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    sbsp-1 SMB domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176513, updated on 9-Dec-2024

    Summary

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    Official Symbol
    sbsp-1
    Official Full Name
    SMB domain-containing protein
    Primary source
    WormBase:WBGene00011269
    Locus tag
    CELE_R17.3
    See related
    AllianceGenome:WB:WBGene00011269
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in intestine and rectal gland cell. Orthologous to human SBSPON (somatomedin B and thrombospondin type 1 domain containing). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See sbsp-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    8
    Sequence:
    Chromosome: III; NC_003281.10 (10832936..10839451)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Endonuclease/exonuclease/phosphatase domain-containing protein Neighboring gene F-box domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    SMB domain-containing protein
    NP_001317877.1
    • Confirmed by transcript evidence
    NP_001317878.1
    • Confirmed by transcript evidence
    NP_499387.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      10832936..10839451
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066986.6 → NP_499387.1  SMB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_499387.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O18003
      Conserved Domains (2) summary
      smart00209
      Location:247 → 296
      TSP1; Thrombospondin type 1 repeats
      pfam01033
      Location:213 → 239
      Somatomedin_B; Somatomedin B domain

    2. NM_001330967.3 → NP_001317877.1  SMB domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1C3NSN4
      Conserved Domains (2) summary
      smart00209
      Location:236 → 285
      TSP1; Thrombospondin type 1 repeats
      pfam01033
      Location:202 → 228
      Somatomedin_B; Somatomedin B domain

    3. NM_001330968.3 → NP_001317878.1  SMB domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1C3NSJ0
      Conserved Domains (2) summary
      smart00209
      Location:61 → 110
      TSP1; Thrombospondin type 1 repeats
      pfam01033
      Location:27 → 53
      Somatomedin_B; Somatomedin B domain
    Nucleotide Protein
    Heading Accession and Version

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