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    F30A10.9 PIN domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 172780, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F30A10.9
    Official Full Name
    PIN domain-containing protein
    Primary source
    WormBase:WBGene00009266
    Locus tag
    CELE_F30A10.9
    See related
    AllianceGenome:WB:WBGene00009266
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in rRNA processing. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human FCF1 (FCF1 rRNA-processing protein). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F30A10.9 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (9504403..9505768, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-3-phosphatase Neighboring gene Kinase Neighboring gene ncRNA Neighboring gene Syntrophin-1 Neighboring gene Ubiquitin carboxyl-terminal hydrolase usp-48 Neighboring gene miscRNA Neighboring gene Tudor domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PIN domain-containing protein
    NP_492523.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      9504403..9505768 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_060122.5 → NP_492523.1  PIN domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492523.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93638
      Conserved Domains (1) summary
      cd09864
      Location:57 → 185
      PIN_Fcf1-like; VapC-like PIN domain of rRNA-processing protein, Fcf1 (Utp24, YDR339C), and other eukaryotic homologs
    Nucleotide Protein
    Heading Accession and Version

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