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    F57C2.5 Strictosidine synthase conserved region domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175112, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F57C2.5
    Official Full Name
    Strictosidine synthase conserved region domain-containing protein
    Primary source
    WormBase:WBGene00010197
    Locus tag
    CELE_F57C2.5
    See related
    AllianceGenome:WB:WBGene00010197
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable hydrolase activity. Predicted to be involved in biosynthetic process. Located in sarcoplasmic reticulum. Orthologous to human APMAP (adipocyte plasma membrane associated protein). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F57C2.5 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (14526220..14528239, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Protection of telomeres homolog 2 Neighboring gene Toxin Neighboring gene Protein aurora borealis Neighboring gene Multifunctional methyltransferase subunit TRM112-like protein Neighboring gene C-type lectin domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    2. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
    3. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables strictosidine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in sarcoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    Strictosidine synthase conserved region domain-containing protein
    NP_001293539.1
    • Confirmed by transcript evidence
    NP_001300553.1
    • Confirmed by transcript evidence
    NP_497019.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      14526220..14528239 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064618.7 → NP_497019.2  Strictosidine synthase conserved region domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O62265
      Conserved Domains (2) summary
      COG3386
      Location:70 → 292
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      pfam03088
      Location:179 → 260
      Str_synth; Strictosidine synthase

    2. NM_001306610.3 → NP_001293539.1  Strictosidine synthase conserved region domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293539.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PAQ6
      Conserved Domains (2) summary
      COG3386
      Location:20 → 220
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      cl22863
      Location:107 → 188
      Str_synth; Strictosidine synthase

    3. NM_001313624.3 → NP_001300553.1  Strictosidine synthase conserved region domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3ARL4
      Conserved Domains (1) summary
      cl22863
      Location:1 → 57
      Str_synth; Strictosidine synthase
    Nucleotide Protein
    Heading Accession and Version

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