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    F31D4.5 Pleckstrin homology domain-containing family D member 1 [ Caenorhabditis elegans ]

    Gene ID: 180373, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F31D4.5
    Official Full Name
    Pleckstrin homology domain-containing family D member 1
    Primary source
    WormBase:WBGene00009292
    Locus tag
    CELE_F31D4.5
    See related
    AllianceGenome:WB:WBGene00009292
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human PLEKHD1 (pleckstrin homology and coiled-coil domain containing D1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F31D4.5 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    8
    Sequence:
    Chromosome: V; NC_003283.11 (20854071..20858730)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase Neighboring gene C-type lectin domain-containing protein Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 Neighboring gene Peptidase S1 domain-containing protein Neighboring gene Potassium channel domain-containing protein Neighboring gene MATH domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Pleckstrin homology domain-containing family D member 1
    NP_001256959.1
    • Partially confirmed by transcript evidence
    NP_001256960.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      20854071..20858730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270030.2 → NP_001256959.1  Pleckstrin homology domain-containing family D member 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256959.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7WNA6, B7WNA7, O45420
      Conserved Domains (3) summary
      cd13281
      Location:73 → 212
      PH_PLEKHD1; Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain
      pfam00169
      Location:88 → 192
      PH; PH domain
      pfam08286
      Location:285 → 337
      Spc24; Spc24 subunit of Ndc80

    2. NM_001270031.4 → NP_001256960.1  Pleckstrin homology domain-containing family D member 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256960.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O45420
      Conserved Domains (3) summary
      cd13281
      Location:73 → 212
      PH_PLEKHD1; Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain
      pfam00169
      Location:88 → 192
      PH; PH domain
      pfam08286
      Location:285 → 337
      Spc24; Spc24 subunit of Ndc80
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O45420.2

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