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    Anapc13 anaphase promoting complex subunit 13 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 685029, updated on 9-Dec-2024

    Summary

    Official Symbol
    Anapc13provided by RGD
    Official Full Name
    anaphase promoting complex subunit 13provided by RGD
    Primary source
    RGD:1583270
    See related
    EnsemblRapid:ENSRNOG00000008459 AllianceGenome:RGD:1583270
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in anaphase-promoting complex-dependent catabolic process and protein polyubiquitination. Predicted to be part of anaphase-promoting complex. Orthologous to human ANAPC13 (anaphase promoting complex subunit 13). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 96.9), Heart (RPKM 96.2) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Anapc13 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (112084405..112092821)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (103205520..103213936)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (111107358..111115774)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene kyphoscoliosis peptidase Neighboring gene ribosomal protein L27, pseudogene 3 Neighboring gene centrosomal protein 63 Neighboring gene uncharacterized LOC134480096 Neighboring gene angiomotin like 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    anaphase-promoting complex subunit 13

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001173983.3NP_001167454.1  anaphase-promoting complex subunit 13

      See identical proteins and their annotated locations for NP_001167454.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6I2H8, D4A427
      Related
      ENSRNOP00000011203.2, ENSRNOT00000011203.6
      Conserved Domains (1) summary
      pfam05839
      Location:174
      Apc13p; Apc13p protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      112084405..112092821
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006243681.5XP_006243743.1  anaphase-promoting complex subunit 13 isoform X1

      See identical proteins and their annotated locations for XP_006243743.1

      UniProtKB/TrEMBL
      A6I2H8, D4A427
      Conserved Domains (1) summary
      pfam05839
      Location:174
      Apc13p; Apc13p protein
    2. XM_039082157.2XP_038938085.1  anaphase-promoting complex subunit 13 isoform X1

      UniProtKB/TrEMBL
      A6I2H8, D4A427
      Conserved Domains (1) summary
      pfam05839
      Location:174
      Apc13p; Apc13p protein