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    Irgm2 immunity-related GTPase family M member 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100362733, updated on 27-Nov-2024

    Summary

    Official Symbol
    Irgm2provided by RGD
    Official Full Name
    immunity-related GTPase family M member 2provided by RGD
    Primary source
    RGD:2324125
    See related
    EnsemblRapid:ENSRNOG00000073574 AllianceGenome:RGD:2324125
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ifggd2
    Expression
    Biased expression in Liver (RPKM 631.7), Adrenal (RPKM 330.1) and 8 other tissues See more
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    Genomic context

    See Irgm2 in Genome Data Viewer
    Location:
    10q22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (42889919..42900060)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (42389452..42399604)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (43645508..43655657)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480693 Neighboring gene interferon gamma induced GTPase Neighboring gene small nucleolar RNA SNORA5 Neighboring gene uncharacterized LOC108352086 Neighboring gene RIKEN cDNA 4930438A08 gene like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    interferon inducible GTPase 2
    Names
    immunity-related GTPase family M protein 1
    interferon-gamma-inducible GTPase Ifggd2 protein
    rCG32755-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001408748.1NP_001395677.1  interferon inducible GTPase 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      J7P1Z1
      Related
      ENSRNOP00000100313.1, ENSRNOT00000169951.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      42889919..42900060
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039087216.2XP_038943144.1  interferon inducible GTPase 2 isoform X1

      UniProtKB/TrEMBL
      J7P1Z1
      Conserved Domains (1) summary
      pfam05049
      Location:30389
      IIGP; Interferon-inducible GTPase (IIGP)

    RNA

    1. XR_010055117.1 RNA Sequence