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    Vsig10l V-set and immunoglobulin domain containing 10 like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308556, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Vsig10lprovided by RGD
    Official Full Name
    V-set and immunoglobulin domain containing 10 likeprovided by RGD
    Primary source
    RGD:1564982
    See related
    EnsemblRapid:ENSRNOG00000023411 AllianceGenome:RGD:1564982
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564982
    Summary
    Predicted to be located in nucleoplasm. Orthologous to human VSIG10L (V-set and immunoglobulin domain containing 10 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 35.2), Heart (RPKM 29.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Vsig10l in Genome Data Viewer
    Location:
    1q22
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (103007933..103016161)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (93871487..93880157)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (98458691..98467444, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene claudin domain containing 2 Neighboring gene electron transfer flavoprotein subunit beta Neighboring gene uncharacterized LOC120099799 Neighboring gene IgLON family member 5 Neighboring gene uncharacterized LOC130062809

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    V-set and immunoglobulin domain-containing protein 10-like
    Names
    ZV-set and immunoglobulin domain containing 10 like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432229.1 → NP_001419158.1  V-set and immunoglobulin domain-containing protein 10-like isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      F1M5N2

    2. NM_001432230.1 → NP_001419159.1  V-set and immunoglobulin domain-containing protein 10-like isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    3. NM_001432231.1 → NP_001419160.1  V-set and immunoglobulin domain-containing protein 10-like isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      103007933..103016161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_218633.11 → XP_218633.4  V-set and immunoglobulin domain-containing protein 10-like isoform X2

      Related
      ENSRNOP00000035308.7, ENSRNOT00000039446.8
      Conserved Domains (5) summary
      cd00096
      Location:318 → 387
      Ig; Immunoglobulin domain
      smart00410
      Location:411 → 488
      IG_like; Immunoglobulin like
      pfam07679
      Location:599 → 651
      I-set; Immunoglobulin I-set domain
      pfam13895
      Location:400 → 488
      Ig_2; Immunoglobulin domain
      cl11960
      Location:223 → 296
      Ig; Immunoglobulin domain

    2. XM_063280939.1 → XP_063137009.1  V-set and immunoglobulin domain-containing protein 10-like isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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