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    ycjN putative ABC transporter periplasmic binding protein YcjN [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945696, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycjN
    Official Full Name
    putative ABC transporter periplasmic binding protein YcjN
    Primary source
    ECOCYC:G6648
    Locus tag
    b1310
    See related
    ASAP:ABE-0004402
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1305
    Summary
    First 15 aa are a type II signal peptide. [More information is available at EcoGene: EG13911]. YcjN is a periplasmic binding component of a predicted ATP-dependent sugar transporter. [More information is available at EcoCyc: G6648].
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    Genomic context

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    Sequence:
    NC_000913.3 (1371909..1373201)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene thiosulfate sulfurtransferase PspE Neighboring gene glucosylglycerate phosphorylase Neighboring gene putative ABC transporter membrane subunit YcjO Neighboring gene putative ABC transporter membrane subunit YcjP Neighboring gene D-guloside 3-dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic Localization of Escherichia coli Membrane Proteins. Sueki A, et al. mSystems, 2020 Mar 3. PMID 32127419, Free PMC Article
    2. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
    3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    5. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in transmembrane transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in outer membrane-bounded periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    putative ABC transporter periplasmic binding protein YcjN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1371909..1373201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415826.1 putative ABC transporter periplasmic binding protein YcjN [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415826.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5ZGN8
      Conserved Domains (1) summary
      COG1653
      Location:1 → 430
      UgpB; ABC-type glycerol-3-phosphate transport system, periplasmic component [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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