U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yncE PQQ-like domain-containing protein YncE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946006, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yncE
    Official Full Name
    PQQ-like domain-containing protein YncE
    Primary source
    ECOCYC:G6763
    Locus tag
    b1452
    See related
    ASAP:ABE-0004843
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1446
    Summary
    First 30 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG13775]. YncE is a hypothetical protein. [More information is available at EcoCyc: G6763].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1523307..1524368)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator McbR Neighboring gene putative TonB-dependent outer membrane receptor Neighboring gene L-asparagine transporter Neighboring gene putative glutathione S-transferase YncG

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Overproduction, purification and preliminary X-ray diffraction analysis of YncE, an iron-regulated Sec-dependent periplasmic protein from Escherichia coli. Baba-Dikwa A, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2008 Oct 1. PMID 18931447, Free PMC Article
    2. Defining the role of the Escherichia coli chaperone SecB using comparative proteomics. Baars L, et al. J Biol Chem, 2006 Apr 14. PMID 16352602
    3. Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis. McHugh JP, et al. J Biol Chem, 2003 Aug 8. PMID 12746439
    4. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    5. Structural basis for the DNA-binding activity of the bacterial β-propeller protein YncE. Kagawa W, et al. Acta Crystallogr D Biol Crystallogr, 2011 Dec. PMID 22120742

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in outer membrane-bounded periplasmic space IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    PQQ-like domain-containing protein YncE

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1523307..1524368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415969.1 PQQ-like domain-containing protein YncE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415969.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AIZ4
      Conserved Domains (1) summary
      COG3391
      Location:34 → 333
      YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.