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    ydbA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 2847750, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydbA
    Primary source
    ECOCYC:G6722
    Locus tag
    b4492
    See related
    ASAP:ABE-0285093
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    b1401; b1405; ECK1398
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    Genomic context

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    Sequence:
    NC_000913.3 (1465392..1474013)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional repressor PaaX Neighboring gene 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase Neighboring gene uncharacterized protein YnbG Neighboring gene IS2 insertion element protein InsB Neighboring gene IS2 insertion element repressor InsA Neighboring gene IS30 family transposase Neighboring gene pyridoxal reductase Neighboring gene DUF2773 domain-containing protein YdbD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple IS insertion sequences near the replication terminus in Escherichia coli K-12. Moszer I, et al. Biochimie, 1991 Nov. PMID 1665988
    2. Combined inactivation and expression strategy to study gene function under physiological conditions: application to identification of new Escherichia coli adhesins. Roux A, et al. J Bacteriol, 2005 Feb. PMID 15659678, Free PMC Article
    3. Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA. Salmon KA, et al. J Biol Chem, 2005 Apr 15. PMID 15699038
    4. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R, et al. Protein Sci, 2003 Jun. PMID 12761386, Free PMC Article
    5. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Miscellaneous features

    • Loc: 1465392-1467909 gene fragment 1 of ydbA
    • Loc: 1469246-1469295 gene fragment 2 of ydbA
    • Loc: 1470519-1474013 gene fragment 3 of ydbA

    mobile_element

    • Loc: 1469296-1470516 mobile_element_type = insertion sequence:IS30C

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

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