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    decR DNA-binding transcriptional activator DecR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945091, updated on 17-Dec-2024

    Summary

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    Official Symbol
    decR
    Official Full Name
    DNA-binding transcriptional activator DecR
    Primary source
    ECOCYC:G6247
    Locus tag
    b0447
    See related
    ASAP:ABE-0001553
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    cyuR; ECK0441; ybaO
    Summary
    Rob regulon. [More information is available at EcoGene: EG13218]. YbaO may be a regulator with a role in Rob-mediated regulation . [More information is available at EcoCyc: G6247].
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    Genomic context

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    Sequence:
    NC_000913.3 (468383..468841)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YbaE Neighboring gene HMP-PP phosphatase Neighboring gene ABC transporter family protein MdlA Neighboring gene ABC transporter family protein MdlB Neighboring gene nitrogen regulatory protein PII-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and organization of the abc and mdl genes of Escherichia coli: relationship to eukaryotic multidrug resistance. Allikmets R, et al. Gene, 1993 Dec 22. PMID 7904973
    2. Defining a rob regulon in Escherichia coli by using transposon mutagenesis. Bennik MH, et al. J Bacteriol, 2000 Jul. PMID 10850996, Free PMC Article
    3. Transcription factor DecR (YbaO) controls detoxification of L-cysteine in Escherichia coli. Shimada T, et al. Microbiology (Reading), 2016 Sep. PMID 27435271
    4. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    5. Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress. Nonaka G, et al. Genes Dev, 2006 Jul 1. PMID 16818608, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The growth of mutants lacking either ybaO or its targets yhaOM was delayed in the presence of cysteine.
      Title: Transcription factor DecR (YbaO) controls detoxification of L-cysteine in Escherichia coli.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cysteine catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription initiation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to amino acid IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional activator DecR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      468383..468841
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414981.4 DNA-binding transcriptional activator DecR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414981.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A454A1V9
      Conserved Domains (1) summary
      COG1522
      Location:1 → 151
      Lrp; DNA-binding transcriptional regulator, Lrp family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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