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    yghD putative type II secretion system M-type protein YghD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947025, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yghD
    Official Full Name
    putative type II secretion system M-type protein YghD
    Primary source
    ECOCYC:G7535
    Locus tag
    b2968
    See related
    ASAP:ABE-0009740
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ecfC; ECK2963
    Summary
    The yghFED operon appears to have suffered a deletion of the gspDEFGHIJK homologs (7403 bp) between the gspC-like (yghF) and the gspLM-like (yghED) genes. [More information is available at EcoGene: EG12988]. EcfC is a protein with a possible extracytoplasmic function . [More information is available at EcoCyc: G7535].
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    Genomic context

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    Sequence:
    NC_000913.3 (3110590..3111126, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF554 domain-containing protein YqgA Neighboring gene tRNA-Phe Neighboring gene putative type II secretion system L-type protein YghE Neighboring gene protein YqhJ Neighboring gene putative type II secretion system C-type protein YghF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a protein secretory pathway for the secretion of heat-labile enterotoxin by an enterotoxigenic strain of Escherichia coli. Tauschek M, et al. Proc Natl Acad Sci U S A, 2002 May 14. PMID 12011463, Free PMC Article
    2. The underlying mechanisms of type II protein secretion. Filloux A. Biochim Biophys Acta, 2004 Nov 11. PMID 15546665
    3. Characterization of the Escherichia coli sigma E regulon. Dartigalongue C, et al. J Biol Chem, 2001 Jun 15. PMID 11274153
    4. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in protein secretion by the type II secretion system IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of type II protein secretion system complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative type II secretion system M-type protein YghD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3110590..3111126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417442.1 putative type II secretion system M-type protein YghD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417442.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376WUD3
      Conserved Domains (1) summary
      PRK09731
      Location:1 → 178
      PRK09731; type II secretion system protein
    Nucleotide Protein
    Heading Accession and Version

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