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    yhjY putative outer membrane protein YhjY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948073, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yhjY
    Official Full Name
    putative outer membrane protein YhjY
    Primary source
    ECOCYC:EG12269
    Locus tag
    b3548
    See related
    ASAP:ABE-0011589
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3535
    Summary
    Predicted 30 aa signal peptide is consistent with an observed precursor cleavage, blocked by azide. [More information is available at EcoGene: EG12269].
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    Genomic context

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    Sequence:
    NC_000913.3 (3712236..3712934, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphoethanolamine transferase EptB Neighboring gene putative transporter YhjX Neighboring gene 3-methyl-adenine DNA glycosylase I, constitutive Neighboring gene peptidyl-lysine N-acetyltransferase YiaC Neighboring gene biotin sulfoxide reductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of RpoS (sigma(S))-regulated genes in Salmonella enterica serovar typhimurium. Ibanez-Ruiz M, et al. J Bacteriol, 2000 Oct. PMID 11004173, Free PMC Article
    2. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R, et al. Protein Sci, 2003 Jun. PMID 12761386, Free PMC Article
    3. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
    4. New Escherichia coli outer membrane proteins identified through prediction and experimental verification. Marani P, et al. Protein Sci, 2006 Apr. PMID 16522795, Free PMC Article
    5. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative outer membrane protein YhjY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3712236..3712934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418004.4 putative outer membrane protein YhjY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418004.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1X3JAU1
      Conserved Domains (1) summary
      COG5571
      Location:1 → 232
      YhjY; Uncharacterized protein YhjY, contains autotransporter beta-barrel domain [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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