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    hofO DNA utilization protein HofO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947899, updated on 3-Dec-2024

    Summary

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    Official Symbol
    hofO
    Official Full Name
    DNA utilization protein HofO
    Primary source
    ECOCYC:G7737
    Locus tag
    b3393
    See related
    ASAP:ABE-0011075
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3380; yrfB
    Summary
    The yrfB gene product is required for utilization of DNA as the sole source of carbon and energy; yrfB is homologous to genes involved in natural competence and genetic transformation in other bacteria . [More information is available at EcoCyc: G7737].
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    Genomic context

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    Sequence:
    NC_000913.3 (3521009..3521449, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene shikimate kinase 1 Neighboring gene DNA utilization protein HofQ Neighboring gene DNA utilization protein HofP Neighboring gene DNA utilization protein HofN Neighboring gene DNA utilization protein HofM Neighboring gene peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PpdD type IV pilin of Escherichia coli K-12 can Be assembled into pili in Pseudomonas aeruginosa. Sauvonnet N, et al. J Bacteriol, 2000 Feb. PMID 10633126, Free PMC Article
    2. DNA as a nutrient: novel role for bacterial competence gene homologs. Finkel SE, et al. J Bacteriol, 2001 Nov. PMID 11591672, Free PMC Article
    3. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    4. Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient. Palchevskiy V, et al. J Bacteriol, 2006 Jun. PMID 16707682, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within carbon utilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA utilization protein HofO

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3521009..3521449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417852.1 DNA utilization protein HofO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417852.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7K044
    Nucleotide Protein
    Heading Accession and Version

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