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    yddA ABC transporter family protein YddA [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945945, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yddA
    Official Full Name
    ABC transporter family protein YddA
    Primary source
    ECOCYC:EG11742
    Locus tag
    b1496
    See related
    ASAP:ABE-0004984
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1490
    Summary
    YddA was found, in random transposon mutagenesis studies, to be required for growth in optimum (rich medium at 37 degrees C) growth conditions but not under cold conditions (15 degrees C) or in minimal medium . [More information is available at EcoCyc: EG11742].
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    Genomic context

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    Sequence:
    NC_000913.3 (1577657..1579342, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene periplasmic metalloprotease Neighboring gene putative TonB-dependent receptor YddB Neighboring gene protein YneP Neighboring gene putative anaerobic sulfatase maturation enzyme YdeM Neighboring gene putative sulfatase YdeN

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and Functional Characterization of Putative Escherichia coli ABC Multidrug Efflux Transporter YddA. Feng Z, et al. J Microbiol Biotechnol, 2020 Jul 28. PMID 32347079, Free PMC Article
    2. Novel macrolide-specific ABC-type efflux transporter in Escherichia coli. Kobayashi N, et al. J Bacteriol, 2001 Oct. PMID 11544226, Free PMC Article
    3. Analysis of a complete library of putative drug transporter genes in Escherichia coli. Nishino K, et al. J Bacteriol, 2001 Oct. PMID 11566977, Free PMC Article
    4. Scanning the Escherichia coli chromosome by random transposon mutagenesis and multiple phenotypic screening. Serina S, et al. Res Microbiol, 2004 Oct. PMID 15380559
    5. The Escherichia coli ATP-binding cassette (ABC) proteins. Linton KJ, et al. Mol Microbiol, 1998 Apr. PMID 9593292

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Cloning and Functional Characterization of Putative Escherichia coli ABC Multidrug Efflux Transporter YddA.
      Title: Cloning and Functional Characterization of Putative Escherichia coli ABC Multidrug Efflux Transporter YddA.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ABC transporter family protein YddA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1577657..1579342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416013.1 ABC transporter family protein YddA [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416013.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5YFR3
      Conserved Domains (1) summary
      COG4178
      Location:3 → 561
      YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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