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    yfiH purine nucleoside phosphorylase YfiH [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947089, updated on 17-Dec-2024

    Summary

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    Official Symbol
    yfiH
    Official Full Name
    purine nucleoside phosphorylase YfiH
    Primary source
    ECOCYC:EG12097
    Locus tag
    b2593
    See related
    ASAP:ABE-0008530
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2591; pgeF
    Summary
    Probable false positive lipoprotein prediction, Cys not conserved. [More information is available at EcoGene: EG12097].
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    Genomic context

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    Sequence:
    NC_000913.3 (2734303..2735034, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 16S ribosomal RNA Neighboring gene ClpB80;chaperone protein ClpB Neighboring gene ncRNA Neighboring gene 23S rRNA pseudouridine(1911/1915/1917) synthase Neighboring gene outer membrane protein assembly factor BamD Neighboring gene ribosome-associated inhibitor A Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ClpB is the Escherichia coli heat shock protein F84.1. Squires CL, et al. J Bacteriol, 1991 Jul. PMID 2066329, Free PMC Article
    2. Expression of ClpB, an analog of the ATP-dependent protease regulatory subunit in Escherichia coli, is controlled by a heat shock sigma factor (sigma 32). Kitagawa M, et al. J Bacteriol, 1991 Jul. PMID 1906060, Free PMC Article
    3. A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli. Raychaudhuri S, et al. RNA, 1998 Nov. PMID 9814761, Free PMC Article
    4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 2'-deoxyadenosine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables S-methyl-5-thioadenosine phosphorylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables S-methyl-5-thioadenosine phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables adenosine deaminase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables adenosine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables copper ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables copper ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables purine-nucleoside phosphorylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within peptidoglycan metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in outer membrane-bounded periplasmic space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    purine nucleoside phosphorylase YfiH
    NP_417084.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2734303..2735034 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417084.1 purine nucleoside phosphorylase YfiH [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417084.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3P5DUX5, A0AAN5JS31
      Conserved Domains (1) summary
      PRK10723
      Location:1 → 243
      PRK10723; polyphenol oxidase
    Nucleotide Protein
    Heading Accession and Version

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