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    ygiB DUF1190 domain-containing protein YgiB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945086, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygiB
    Official Full Name
    DUF1190 domain-containing protein YgiB
    Primary source
    ECOCYC:EG11164
    Locus tag
    b3037
    See related
    ASAP:ABE-0009969
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3028
    Summary
    YgiB has a probable 35 aa type II signal peptide. [More information is available at EcoGene: EG11164]. Transcription of ygiB is induced upon biofilm formation compared to planktonic growth in both exponential and stationary phase. [More information is available at EcoCyc: EG11164].
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    Genomic context

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    Sequence:
    NC_000913.3 (3179744..3180415)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ADP-sugar pyrophosphatase Neighboring gene outer membrane channel TolC Neighboring gene putative acid--amine ligase YgiC Neighboring gene 4,5-DOPA dioxygenase extradiol

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of a region duplicated in Escherichia coli toc mutants. Yang TP, et al. Biochim Biophys Acta, 1992 Mar 24. PMID 1314093
    2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    4. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
    5. Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Beloin C, et al. Mol Microbiol, 2004 Feb. PMID 14731270

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell outer membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF1190 domain-containing protein YgiB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3179744..3180415
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417509.3 DUF1190 domain-containing protein YgiB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417509.3

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAD2V7Y8
      Conserved Domains (1) summary
      PRK11653
      Location:1 → 223
      PRK11653; DUF1190 family protein
    Nucleotide Protein
    Heading Accession and Version

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