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    yhdZ putative ABC transporter ATP-binding subunit YhdZ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947763, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yhdZ
    Official Full Name
    putative ABC transporter ATP-binding subunit YhdZ
    Primary source
    ECOCYC:EG12837
    Locus tag
    b3271
    See related
    ASAP:ABE-0010738
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3258
    Summary
    Putative ABC transporter YhdWXYZ has an unknown substrate and yhdW' is an apparent pseudogene. [More information is available at EcoGene: EG12837]. Yhdz is a periplasmic binding component of a predicted amino acid ABC transporter. [More information is available at EcoCyc: EG12837].
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    Genomic context

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    Sequence:
    NC_000913.3 (3422436..3423194)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter membrane subunit YhdX Neighboring gene putative ABC transporter membrane subunit YhdY Neighboring gene 5S ribosomal RNA Neighboring gene tRNA-Thr

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
    2. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
    3. The Escherichia coli ATP-binding cassette (ABC) proteins. Linton KJ, et al. Mol Microbiol, 1998 Apr. PMID 9593292
    4. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ABC-type amino acid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP binding ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in peptide transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex IC
    Inferred by Curator
    more info
    		 PubMed 
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative ABC transporter ATP-binding subunit YhdZ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3422436..3423194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417737.1 putative ABC transporter ATP-binding subunit YhdZ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417737.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAN5ZJH6
      Conserved Domains (1) summary
      COG1126
      Location:11 → 250
      GlnQ; ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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