U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rsmI 16S rRNA 2'-O-ribose C1402 methyltransferase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947664, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rsmI
    Official Full Name
    16S rRNA 2'-O-ribose C1402 methyltransferase
    Primary source
    ECOCYC:G7641
    Locus tag
    b3146
    See related
    ASAP:ABE-0010337
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3134; yraL
    Summary
    YraL deletion mutants are reported to form small colonies by Arigoni(1998) and normal colonies by Dassain(1999). [More information is available at EcoGene: EG12777].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (3292475..3293335, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial usher protein YraJ Neighboring gene putative fimbrial adhesin YraK Neighboring gene outer membrane lipoprotein - activator of MrcA activity Neighboring gene PF02021 family protein YraN Neighboring gene DnaA initiator-associating protein DiaA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Structural Insights into the Methylation of C1402 in 16S rRNA by Methyltransferase RsmI. Zhao M, et al. PLoS One, 2016. PMID 27711192, Free PMC Article
    2. A new essential gene of the 'minimal genome' affecting cell division. Dassain M, et al. Biochimie, 1999 Aug-Sep. PMID 10572302
    3. A genome-based approach for the identification of essential bacterial genes. Arigoni F, et al. Nat Biotechnol, 1998 Sep. PMID 9743119
    4. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Baba T, et al. Mol Syst Biol, 2006. PMID 16738554, Free PMC Article
    5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables rRNA (cytosine-2'-O-)-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables rRNA (cytosine-2'-O-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA (cytosine-2'-O-)-methyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    16S rRNA 2'-O-ribose C1402 methyltransferase
    NP_417615.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3292475..3293335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417615.1 16S rRNA 2'-O-ribose C1402 methyltransferase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417615.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7EGH2
      Conserved Domains (1) summary
      PRK14994
      Location:1 → 286
      PRK14994; SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.