U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ubald1a UBA-like domain containing 1a [ Danio rerio (zebrafish) ]

    Gene ID: 794012, updated on 4-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    ubald1aprovided by ZNC
    Official Full Name
    UBA-like domain containing 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-191
    See related
    Ensembl:ENSDARG00000002362 AllianceGenome:ZFIN:ZDB-GENE-040718-191
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ubald1; fam100a; fam100aa; zgc:92858
    Summary
    Orthologous to human UBALD1 (UBA like domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ubald1a in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (20098848..20120705, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (19976974..19998853, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene myocardin related transcription factor Ba Neighboring gene lipopolysaccharide-induced tumor necrosis factor-alpha factor-like Neighboring gene mahogunin, ring finger 1a Neighboring gene forkhead box J1b

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The timing of Timezyme diversification in vertebrates. Cazaméa-Catalan D, et al. PLoS One, 2014. PMID 25486407, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC92858, MGC173845

    General protein information

    Go to the top of the page Help
    Preferred Names
    UBA-like domain-containing protein 1
    Names
    f100a
    family with sequence similarity 100, member Aa
    protein FAM100A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002488.1 → NP_001002488.1  UBA-like domain-containing protein 1

      See identical proteins and their annotated locations for NP_001002488.1

      Status: PROVISIONAL

      Source sequence(s)
      BC076320
      UniProtKB/Swiss-Prot
      Q6DGM1
      UniProtKB/TrEMBL
      B7ZUV8
      Related
      ENSDARP00000138661.1, ENSDART00000158412.2
      Conserved Domains (1) summary
      cd14343
      Location:6 → 44
      UBA_F100B_like; UBA-like domain found in protein FAM100B

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      20098848..20120705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009306668.4 → XP_009304943.1  UBA-like domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_009304943.1

      UniProtKB/Swiss-Prot
      Q6DGM1
      UniProtKB/TrEMBL
      B7ZUV8
      Related
      ENSDARP00000102434.3, ENSDART00000112768.5
      Conserved Domains (1) summary
      cd14343
      Location:6 → 44
      UBA_F100B_like; UBA-like domain found in protein FAM100B
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DGM1.1 GenPept UniProtKB/Swiss-Prot:Q6DGM1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.