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    si:ch211-276c2.4 si:ch211-276c2.4 [ Danio rerio (zebrafish) ]

    Gene ID: 321704, updated on 4-Jan-2025

    Summary

    Official Symbol
    si:ch211-276c2.4provided by ZNC
    Official Full Name
    si:ch211-276c2.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-423
    See related
    Ensembl:ENSDARG00000053800 AllianceGenome:ZFIN:ZDB-GENE-030131-423
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb30e12; wu:fb30e12
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
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    Genomic context

    See si:ch211-276c2.4 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (41693635..41707827, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (41754306..41757304, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene calsyntenin 2b Neighboring gene splA/ryanodine receptor domain and SOCS box containing 4b Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene finTRIM family, member 76

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC321704; zinc finger protein 79

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      41693635..41707827 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002664694.7XP_002664740.1  zinc finger protein 79

      UniProtKB/TrEMBL
      A0A8M1RE09, E7F7C6
      Related
      ENSDARP00000127729.1, ENSDART00000154384.2
      Conserved Domains (3) summary
      COG5048
      Location:90369
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:165185
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:234258
      zf-H2C2_2; Zinc-finger double domain