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    si:ch211-133n4.4 si:ch211-133n4.4 [ Danio rerio (zebrafish) ]

    Gene ID: 559260, updated on 4-Jan-2025

    Summary

    Official Symbol
    si:ch211-133n4.4provided by ZNC
    Official Full Name
    si:ch211-133n4.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-898
    See related
    Ensembl:ENSDARG00000071224 AllianceGenome:ZFIN:ZDB-GENE-030131-898
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb52d02; wu:fb52d02; zgc:153988
    Summary
    Predicted to enable hydrolase activity; metal ion binding activity; and nucleic acid binding activity. [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    NEW
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    Genomic context

    See si:ch211-133n4.4 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (3237790..3240579, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (3296892..3299681, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:ch211-133n4.6 Neighboring gene zgc:86598 Neighboring gene uncharacterized LOC137488458 Neighboring gene zgc:158445 Neighboring gene immune-related, lectin-like receptor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC153988

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC559260

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077376.1NP_001070844.1  uncharacterized protein LOC559260 precursor

      See identical proteins and their annotated locations for NP_001070844.1

      Status: PREDICTED

      Source sequence(s)
      BC124785
      UniProtKB/TrEMBL
      A0A8M1NBL9, Q08BC3
      Related
      ENSDARP00000095939.4, ENSDART00000105168.5
      Conserved Domains (1) summary
      smart00892
      Location:67225
      Endonuclease_NS; DNA/RNA non-specific endonuclease

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      3237790..3240579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)