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    Ceacam9 CEA cell adhesion molecule 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 116711, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ceacam9provided by RGD
    Official Full Name
    CEA cell adhesion molecule 9provided by RGD
    Primary source
    RGD:70954
    See related
    EnsemblRapid:ENSRNOG00000046915 AllianceGenome:RGD:70954
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CEACAM21 (CEA cell adhesion molecule 21). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Uterus (RPKM 1.6), Testes (RPKM 1.3) and 2 other tissues See more
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    Genomic context

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    See Ceacam9 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (86533724..86538259)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (77405619..77410154)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (78624183..78663980)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene CEA cell adhesion molecule 15 like 1 Neighboring gene CEA cell adhesion molecule 15 Neighboring gene adaptor related protein complex 2 subunit sigma 1 Neighboring gene macrophage migration inhibitory factor like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Trophoblast cell-specific carcinoembryonic antigen cell adhesion molecule 9 is not required for placental development or a positive outcome of allotypic pregnancies. Finkenzeller D, et al. Mol Cell Biol, 2000 Oct. PMID 10982830, Free PMC Article
    2. Identification of a carcinoembryonic antigen gene family in the rat. Analysis of the N-terminal domains reveals immunoglobulin-like, hypervariable regions. Kodelja V, et al. J Biol Chem, 1989 Apr 25. PMID 2708349
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in T cell activation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CEA cell adhesion molecule 9
    Names
    CEA-related cell adhesion molecule 9
    carcinoembryonic antigen-related cell adhesion molecule 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053919.2 → NP_446371.1  CEA cell adhesion molecule 9 precursor

      See identical proteins and their annotated locations for NP_446371.1

      Status: PROVISIONAL

      Source sequence(s)
      AF172446
      UniProtKB/TrEMBL
      M0R9N3, Q9R121
      Related
      ENSRNOP00000066209.2, ENSRNOT00000071271.4
      Conserved Domains (3) summary
      cd05774
      Location:30 → 134
      Ig_CEACAM_D1; First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)
      smart00410
      Location:147 → 226
      IG_like; Immunoglobulin like
      pfam13895
      Location:141 → 226
      Ig_2; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      86533724..86538259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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